Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:178658083..178660971-chr2:178664386..178667006,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10169917	0.86[YRI][hapmap]
rs13424417	0.89[YRI][hapmap]
rs1438060	0.93[YRI][hapmap]
rs1898589	1.00[YRI][hapmap]
rs1946814	0.93[YRI][hapmap]
rs2360221	0.94[YRI][hapmap]
rs2365895	0.94[YRI][hapmap]
rs2886499	0.94[YRI][hapmap]
rs2886500	0.94[YRI][hapmap]
rs3821010	0.93[YRI][hapmap]
rs41440047	0.93[YRI][hapmap]
rs4243392	0.93[YRI][hapmap]
rs4446096	0.94[YRI][hapmap]
rs4522644	0.94[YRI][hapmap]
rs4893988	0.94[YRI][hapmap]
rs4893989	0.94[YRI][hapmap]
rs6433695	0.94[YRI][hapmap]
rs6433697	0.82[YRI][hapmap]
rs6433698	0.93[YRI][hapmap]
rs6720891	0.93[YRI][hapmap]
rs6731843	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6739045	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6746962	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6758543	0.94[YRI][hapmap]
rs7557283	0.94[YRI][hapmap]
rs7559765	0.94[YRI][hapmap]
rs7568068	0.94[YRI][hapmap]
rs7570898	0.94[YRI][hapmap]
rs7595951	0.85[YRI][hapmap]
rs934802	0.93[YRI][hapmap]
rs934803	0.93[YRI][hapmap]
rs934804	0.94[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999086	chr2:178262348-178773585	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv536055	chr2:178262348-178773585	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv583690	chr2:178638381-178712283	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178663200-178670000	Weak transcription	Adipose Nuclei	Adipose

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