Variant report

Variant	rs16865916
Chromosome Location	chr2:7217472-7217473
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs16865917	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16865920	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16865922	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16865923	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16865924	0.95[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs16865931	0.86[EUR][1000 genomes]
rs16865932	0.86[EUR][1000 genomes]
rs17669966	0.80[EUR][1000 genomes]
rs4484010	0.86[EUR][1000 genomes]
rs4522579	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4610023	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4635504	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55910201	0.82[EUR][1000 genomes]
rs56115537	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56129949	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56168684	0.86[EUR][1000 genomes]
rs56242290	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57541858	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58036970	0.86[EUR][1000 genomes]
rs61329746	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61522366	0.86[EUR][1000 genomes]
rs62105864	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62105867	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62105868	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62107982	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62107983	0.82[EUR][1000 genomes]
rs6718054	0.86[EUR][1000 genomes]
rs6723966	0.86[EUR][1000 genomes]
rs6729284	0.86[EUR][1000 genomes]
rs6729685	0.86[EUR][1000 genomes]
rs6732547	0.86[EUR][1000 genomes]
rs6732551	0.86[EUR][1000 genomes]
rs6738592	0.86[EUR][1000 genomes]
rs6738821	0.86[EUR][1000 genomes]
rs6742329	0.86[EUR][1000 genomes]
rs6742546	0.86[EUR][1000 genomes]
rs6746186	0.86[EUR][1000 genomes]
rs67483739	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6759972	0.86[EUR][1000 genomes]
rs6760279	0.86[EUR][1000 genomes]
rs73149306	0.95[ASN][1000 genomes]
rs73149321	0.93[ASN][1000 genomes]
rs7601791	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7607248	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469394	chr2:7197199-7230988	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv580914	chr2:7197199-7230988	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv915888	chr2:7197783-7461967	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:7194200-7234000	Weak transcription	Pancreas	Pancrea
2	chr2:7203000-7217600	Weak transcription	Adipose Nuclei	Adipose
3	chr2:7204400-7218600	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr2:7209400-7218600	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr2:7211800-7224000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr2:7213400-7218800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr2:7214200-7230000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr2:7214400-7234000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr2:7214800-7218600	Strong transcription	Primary T cells from cord blood	blood
10	chr2:7216000-7218600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
11	chr2:7217000-7218800	Enhancers	Fetal Muscle Leg	muscle
12	chr2:7217200-7217600	Weak transcription	Fetal Muscle Trunk	muscle
13	chr2:7217200-7223200	Weak transcription	Dnd41	blood
14	chr2:7217400-7218000	Enhancers	Skeletal Muscle Male	skeletal muscle

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