Variant report

Variant	rs16866001
Chromosome Location	chr2:7343031-7343032
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1525493	1.00[ASN][1000 genomes]
rs16865997	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16866005	1.00[ASN][1000 genomes]
rs16866018	1.00[AMR][1000 genomes]
rs16866021	1.00[ASN][1000 genomes]
rs16866047	1.00[AMR][1000 genomes]
rs56083950	1.00[ASN][1000 genomes]
rs57487804	1.00[ASN][1000 genomes]
rs6722141	1.00[AMR][1000 genomes]
rs6739710	1.00[ASN][1000 genomes]
rs72770010	1.00[ASN][1000 genomes]
rs73157308	1.00[AMR][1000 genomes]
rs7566298	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7603409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs940769	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915888	chr2:7197783-7461967	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1000136	chr2:7337270-7379211	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv833337	chr2:7337273-7521146	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:7341200-7344400	Enhancers	Fetal Brain Male	brain
2	chr2:7341600-7343200	Enhancers	Brain Germinal Matrix	brain
3	chr2:7341800-7343200	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr2:7341800-7343200	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr2:7342000-7343200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr2:7342000-7343200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr2:7342000-7343200	Enhancers	Fetal Brain Female	brain
8	chr2:7342400-7343400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr2:7342400-7349600	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr2:7343000-7343200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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