The 2.0 version of rSNPBase

Variant report

Variant rs16866726
Chromosome Location chr2:180293852-180293853
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:59 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:180292800-180294600 Enhancers ES-UCSF4 Cell Line embryonic stem cell
2 chr2:180292800-180294600 Enhancers Brain Germinal Matrix brain
3 chr2:180293000-180294200 Enhancers Fetal Muscle Leg muscle
4 chr2:180293000-180294600 Enhancers H1 Cell Line embryonic stem cell
5 chr2:180293200-180294000 Flanking Active TSS HUES48 Cell Line embryonic stem cell
6 chr2:180293200-180294200 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
7 chr2:180293200-180294400 Enhancers iPS-18 Cell Line embryonic stem cell
8 chr2:180293400-180294000 Active TSS ES-I3 Cell Line embryonic stem cell
9 chr2:180293400-180294000 Flanking Active TSS iPS-15b Cell Line embryonic stem cell
10 chr2:180293400-180294000 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
11 chr2:180293400-180294200 Active TSS iPS-20b Cell Line embryonic stem cell
12 chr2:180293400-180294200 Flanking Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
13 chr2:180293400-180294200 Active TSS Brain Inferior Temporal Lobe brain
14 chr2:180293400-180294200 Enhancers Brain Substantia Nigra brain
15 chr2:180293400-180294200 Active TSS Duodenum Smooth Muscle Duodenum
16 chr2:180293400-180294200 Bivalent/Poised TSS Stomach Smooth Muscle stomach
17 chr2:180293400-180294200 Flanking Bivalent TSS/Enh HepG2 liver
18 chr2:180293400-180294200 Enhancers NH-A brain
19 chr2:180293400-180294200 Flanking Active TSS Osteobl bone
20 chr2:180293600-180294000 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
21 chr2:180293600-180294000 Bivalent Enhancer H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
22 chr2:180293600-180294000 Flanking Active TSS HUES6 Cell Line embryonic stem cell
23 chr2:180293600-180294000 Flanking Active TSS HUES64 Cell Line embryonic stem cell
24 chr2:180293600-180294000 Flanking Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
25 chr2:180293600-180294000 Active TSS Foreskin Fibroblast Primary Cells skin02 Skin
26 chr2:180293600-180294000 Flanking Active TSS Ovary ovary
27 chr2:180293600-180294000 Flanking Bivalent TSS/Enh Skeletal Muscle Male skeletal muscle
28 chr2:180293600-180294200 Enhancers iPS DF 6.9 Cell Line embryonic stem cell
29 chr2:180293600-180294200 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
30 chr2:180293600-180294200 Enhancers Liver Liver
31 chr2:180293600-180294200 Flanking Active TSS Brain Hippocampus Middle brain
32 chr2:180293600-180294200 Enhancers Fetal Muscle Trunk muscle
33 chr2:180293600-180294400 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
34 chr2:180293600-180294400 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
35 chr2:180293600-180294400 Bivalent/Poised TSS Skeletal Muscle Female skeletal muscle
36 chr2:180293800-180294000 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
37 chr2:180293800-180294000 Flanking Bivalent TSS/Enh Adipose Nuclei Adipose
38 chr2:180293800-180294000 Flanking Active TSS Brain Angular Gyrus brain
39 chr2:180293800-180294000 Active TSS Brain Cingulate Gyrus brain
40 chr2:180293800-180294000 Enhancers Fetal Brain Male brain
41 chr2:180293800-180294000 Enhancers Fetal Intestine Large intestine
42 chr2:180293800-180294000 Bivalent Enhancer Fetal Stomach stomach
43 chr2:180293800-180294000 Enhancers Lung lung
44 chr2:180293800-180294000 Flanking Active TSS Right Atrium heart
45 chr2:180293800-180294000 Enhancers HSMM muscle
46 chr2:180293800-180294200 Enhancers iPS DF 19.11 Cell Line embryonic stem cell
47 chr2:180293800-180294200 Bivalent Enhancer Cortex derived primary cultured neurospheres brain
48 chr2:180293800-180294200 Flanking Active TSS Brain Anterior Caudate brain
49 chr2:180293800-180294200 Active TSS Brain Dorsolateral Prefrontal Cortex brain
50 chr2:180293800-180294200 Enhancers Esophagus oesophagus

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Last update: Aug 31, 2015