Variant report

Variant	rs2292820
Chromosome Location	chr2:180313292-180313293
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1028179	1.00[YRI][hapmap];0.82[ASN][1000 genomes]
rs16866735	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16866740	0.88[ASN][1000 genomes]
rs3749123	0.88[CEU][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes]
rs67886810	0.85[EUR][1000 genomes]
rs72968267	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72968279	0.91[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180307800-180320800	Weak transcription	HepG2	liver
2	chr2:180308200-180332600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:180309200-180352200	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr2:180311400-180319200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr2:180311400-180322200	Weak transcription	Liver	Liver
6	chr2:180311800-180319200	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr2:180312400-180318400	Weak transcription	HMEC	breast
8	chr2:180312600-180319000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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