Variant report

Variant	rs16866809
Chromosome Location	chr2:180449982-180449983
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11885342	0.81[EUR][1000 genomes]
rs16866770	1.00[CHB][hapmap]
rs16866800	0.80[GIH][hapmap]
rs7604253	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875471	chr2:180448523-180469778	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180435200-180461000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:180445200-180450600	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr2:180449200-180450000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr2:180449200-180450000	Enhancers	Liver	Liver
5	chr2:180449200-180450000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr2:180449200-180450000	Enhancers	Fetal Heart	heart
7	chr2:180449200-180450200	Enhancers	HepG2	liver
8	chr2:180449200-180451200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr2:180449600-180453200	Weak transcription	Psoas Muscle	Psoas
10	chr2:180449800-180456600	Weak transcription	Skeletal Muscle Female	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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