Variant report

Variant	rs7604253
Chromosome Location	chr2:180450761-180450762
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11695089	1.00[JPT][hapmap]
rs12693195	1.00[JPT][hapmap]
rs12986652	1.00[JPT][hapmap]
rs13028216	1.00[JPT][hapmap]
rs13029050	1.00[JPT][hapmap]
rs1515304	1.00[JPT][hapmap]
rs1515305	1.00[JPT][hapmap]
rs16866770	1.00[CHB][hapmap]
rs16866800	0.85[CEU][hapmap]
rs16866809	1.00[CHB][hapmap]
rs16866819	1.00[JPT][hapmap]
rs16866823	1.00[JPT][hapmap]
rs16866834	1.00[JPT][hapmap]
rs6433797	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6721295	1.00[JPT][hapmap]
rs9288040	1.00[JPT][hapmap]
rs951427	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875471	chr2:180448523-180469778	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180435200-180461000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:180449200-180451200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr2:180449600-180453200	Weak transcription	Psoas Muscle	Psoas
4	chr2:180449800-180456600	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr2:180450000-180456400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr2:180450600-180453200	Weak transcription	Skeletal Muscle Male	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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