Variant report

Variant	rs16866834
Chromosome Location	chr2:180456850-180456851
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10048645	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs10179050	0.82[JPT][hapmap]
rs10189196	0.84[EUR][1000 genomes]
rs10189808	0.90[EUR][1000 genomes]
rs10191369	0.82[JPT][hapmap]
rs11674582	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs11683510	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11695089	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12615265	0.89[EUR][1000 genomes]
rs12615343	0.89[EUR][1000 genomes]
rs12693195	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12693196	1.00[CEU][hapmap];0.82[GIH][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes]
rs12986652	1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12987486	0.89[EUR][1000 genomes]
rs12991282	0.90[EUR][1000 genomes]
rs12991713	1.00[CEU][hapmap]
rs13000199	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs13001067	0.90[EUR][1000 genomes]
rs13009601	0.87[TSI][hapmap]
rs13014868	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13026689	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs13028216	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13029050	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1515274	0.83[TSI][hapmap]
rs1515304	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1515305	1.00[JPT][hapmap]
rs1515311	0.82[JPT][hapmap]
rs1515312	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1515313	0.90[EUR][1000 genomes]
rs1515314	0.90[EUR][1000 genomes]
rs1606813	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16866810	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs16866819	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16866823	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16866832	1.00[CEU][hapmap];0.82[GIH][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes]
rs16866857	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs2176061	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2222031	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2887110	1.00[CEU][hapmap];0.82[GIH][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes]
rs3106716	0.82[JPT][hapmap]
rs3112976	0.82[JPT][hapmap]
rs34313722	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34376589	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34528783	0.89[EUR][1000 genomes]
rs34545498	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34663462	0.87[EUR][1000 genomes]
rs35439427	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35664499	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36060902	0.89[EUR][1000 genomes]
rs4530328	1.00[MEX][hapmap]
rs62176093	0.87[ASN][1000 genomes]
rs6721295	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs71425640	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73973307	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7581924	1.00[CEU][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes]
rs7592221	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7593595	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7601398	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs7604253	1.00[JPT][hapmap]
rs9288040	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs951427	1.00[CEU][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs969231	0.90[EUR][1000 genomes]
rs988289	0.90[EUR][1000 genomes]
rs988290	1.00[CEU][hapmap];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875471	chr2:180448523-180469778	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180435200-180461000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:180455400-180457200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr2:180456200-180457000	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr2:180456200-180457600	Enhancers	Osteobl	bone
5	chr2:180456200-180458000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr2:180456400-180457000	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr2:180456400-180457000	Enhancers	HSMMtube	muscle
8	chr2:180456400-180457200	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr2:180456400-180457400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr2:180456400-180457400	Enhancers	NHLF	lung
11	chr2:180456400-180459400	Active TSS	Skeletal Muscle Male	skeletal muscle
12	chr2:180456600-180458400	Weak transcription	Psoas Muscle	Psoas
13	chr2:180456600-180459200	Active TSS	Skeletal Muscle Female	skeletal muscle
14	chr2:180456600-180459600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr2:180456800-180457000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
16	chr2:180456800-180457200	Flanking Active TSS	HSMM	muscle
17	chr2:180456800-180457400	Enhancers	NH-A	brain
18	chr2:180456800-180460400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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