Variant report

Variant	rs13009601
Chromosome Location	chr2:180502821-180502822
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10497544	0.83[MEX][hapmap]
rs11687033	0.87[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11688746	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11695089	0.87[TSI][hapmap]
rs12612821	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12693196	0.89[MEX][hapmap];0.91[TSI][hapmap]
rs13004211	1.00[CEU][hapmap];0.85[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13028216	0.87[TSI][hapmap]
rs1399686	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs1399687	0.92[CHB][hapmap];0.86[ASN][1000 genomes]
rs1515274	1.00[CEU][hapmap];0.87[CHD][hapmap];0.92[GIH][hapmap];0.85[JPT][hapmap];0.94[MEX][hapmap];0.96[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1515277	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs1515278	1.00[CHB][hapmap];0.95[CHD][hapmap];0.89[MEX][hapmap];0.92[ASN][1000 genomes]
rs1515304	0.87[TSI][hapmap]
rs16866819	0.87[TSI][hapmap]
rs16866822	0.89[MEX][hapmap]
rs16866832	0.89[MEX][hapmap];0.91[TSI][hapmap]
rs16866834	0.87[TSI][hapmap]
rs16866842	0.89[MEX][hapmap]
rs16866865	0.85[JPT][hapmap];0.91[YRI][hapmap]
rs16866871	1.00[CEU][hapmap];0.85[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs16866876	0.90[CHD][hapmap];0.89[MEX][hapmap]
rs2887110	0.89[MEX][hapmap];0.91[TSI][hapmap]
rs3112944	0.82[ASN][1000 genomes]
rs36017881	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4600606	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62176331	0.93[ASN][1000 genomes]
rs62176332	0.86[ASN][1000 genomes]
rs62176333	0.86[ASN][1000 genomes]
rs62176334	0.86[ASN][1000 genomes]
rs6741622	0.93[ASN][1000 genomes]
rs6756679	0.92[CHB][hapmap];0.86[ASN][1000 genomes]
rs7581924	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.90[ASN][1000 genomes]
rs7601398	0.81[JPT][hapmap]
rs951427	0.87[TSI][hapmap]
rs9750247	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs13009601	PRKRA	cis	parietal	SCAN
rs13009601	HOXD9	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180502200-180510200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr2:180502400-180509600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr2:180502400-180511600	Weak transcription	Fetal Heart	heart
4	chr2:180502600-180503000	Weak transcription	HSMMtube	muscle

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