Variant report

Variant	rs16866865
Chromosome Location	chr2:180489836-180489837
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11687634	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs11688746	0.86[JPT][hapmap]
rs12612821	0.92[ASN][1000 genomes]
rs12615265	0.86[ASN][1000 genomes]
rs12615343	0.86[ASN][1000 genomes]
rs12622221	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs12987486	0.86[ASN][1000 genomes]
rs13004211	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs13005620	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13009601	0.85[JPT][hapmap];0.91[YRI][hapmap]
rs13028491	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13035781	1.00[CHB][hapmap];0.91[JPT][hapmap];0.95[ASN][1000 genomes]
rs1356065	0.90[CHB][hapmap]
rs1356066	0.90[CHB][hapmap]
rs1515274	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.91[ASN][1000 genomes]
rs1515315	0.82[JPT][hapmap]
rs1515317	0.82[JPT][hapmap]
rs1554101	0.84[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs1606816	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs16866857	0.95[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs16866871	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs16866876	0.89[CHB][hapmap]
rs1877943	0.85[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs2138195	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs2176061	0.81[JPT][hapmap]
rs2222031	0.81[JPT][hapmap]
rs2367891	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28792088	0.80[ASN][1000 genomes]
rs3106712	0.81[JPT][hapmap]
rs34528783	0.86[ASN][1000 genomes]
rs34663462	0.86[ASN][1000 genomes]
rs35046215	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35413867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36017881	0.92[ASN][1000 genomes]
rs36060902	0.86[ASN][1000 genomes]
rs4414648	0.84[AFR][1000 genomes]
rs4894115	0.85[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs58386506	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62176301	0.85[ASN][1000 genomes]
rs62176328	0.83[ASN][1000 genomes]
rs6717795	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs7558351	0.85[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs7601398	0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs872158	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs872159	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs872160	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs951425	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs951426	0.81[ASN][1000 genomes]
rs9750247	0.85[JPT][hapmap]
rs979901	0.81[JPT][hapmap]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180486000-180494600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:180487800-180490800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr2:180488400-180494600	Weak transcription	Lung	lung
4	chr2:180489600-180500800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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