Variant report

Variant	rs13035781
Chromosome Location	chr2:180484161-180484162
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:180477852..180480440-chr2:180482454..180484640,2	K562	blood:

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10048645	0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs10169561	0.86[JPT][hapmap]
rs10179050	0.93[CEU][hapmap]
rs10189808	0.81[ASN][1000 genomes]
rs10191369	0.94[CEU][hapmap]
rs11687634	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs11692794	0.86[JPT][hapmap]
rs12612821	0.88[ASN][1000 genomes]
rs12615265	0.91[ASN][1000 genomes]
rs12615343	0.91[ASN][1000 genomes]
rs12622221	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs12693196	0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs12693197	0.86[JPT][hapmap]
rs12987486	0.91[ASN][1000 genomes]
rs12991282	0.81[ASN][1000 genomes]
rs13000199	0.86[JPT][hapmap]
rs13004211	1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs13005620	0.95[ASN][1000 genomes]
rs13012946	0.86[JPT][hapmap]
rs13026689	0.86[JPT][hapmap]
rs13028491	0.95[ASN][1000 genomes]
rs13411084	0.86[JPT][hapmap]
rs13411180	0.86[JPT][hapmap]
rs1356065	0.90[CHB][hapmap]
rs1356066	0.90[CHB][hapmap]
rs1515274	1.00[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs1515311	0.93[CEU][hapmap]
rs1515315	0.91[JPT][hapmap]
rs1515317	0.91[JPT][hapmap]
rs1533385	0.85[JPT][hapmap]
rs1554101	0.84[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1606816	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs16866810	0.82[JPT][hapmap]
rs16866832	0.86[JPT][hapmap]
rs16866857	0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.91[ASN][1000 genomes]
rs16866865	1.00[CHB][hapmap];0.91[JPT][hapmap];0.95[ASN][1000 genomes]
rs16866871	1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs16866876	0.89[CHB][hapmap]
rs17818050	0.81[JPT][hapmap]
rs1877943	0.85[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2138195	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs2176061	0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs2222031	0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs2367891	0.92[ASN][1000 genomes]
rs2887110	0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs3106712	0.91[JPT][hapmap]
rs3106713	0.81[JPT][hapmap]
rs3106714	0.81[JPT][hapmap]
rs34528783	0.91[ASN][1000 genomes]
rs34663462	0.91[ASN][1000 genomes]
rs35046215	0.93[ASN][1000 genomes]
rs35413867	0.95[ASN][1000 genomes]
rs36017881	0.88[ASN][1000 genomes]
rs36060902	0.91[ASN][1000 genomes]
rs4511690	0.86[JPT][hapmap]
rs4894115	0.85[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs58386506	0.91[ASN][1000 genomes]
rs62176301	0.81[ASN][1000 genomes]
rs6717795	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs7425514	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs7558351	0.85[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7581924	0.86[JPT][hapmap];0.84[YRI][hapmap];0.87[AFR][1000 genomes]
rs7593595	0.86[JPT][hapmap]
rs7601398	0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.91[ASN][1000 genomes]
rs872158	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs872159	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs872160	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs951425	0.85[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs951426	0.85[ASN][1000 genomes]
rs969231	0.81[ASN][1000 genomes]
rs979901	0.91[JPT][hapmap]
rs988289	0.81[ASN][1000 genomes]
rs988290	0.86[JPT][hapmap];0.81[ASN][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180477400-180488200	Weak transcription	Pancreas	Pancrea
2	chr2:180477800-180484200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr2:180478800-180488200	Weak transcription	Lung	lung
4	chr2:180479000-180487400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr2:180483400-180484200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr2:180483400-180484200	Enhancers	NHEK	skin
7	chr2:180483400-180486400	Weak transcription	Fetal Heart	heart
8	chr2:180483600-180484400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr2:180484000-180487200	Weak transcription	Skeletal Muscle Male	skeletal muscle

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