Variant report

Variant	rs7581924
Chromosome Location	chr2:180482000-180482001
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10048645	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10189196	0.91[EUR][1000 genomes]
rs10189808	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11674582	1.00[CEU][hapmap]
rs11683510	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs11687033	1.00[CHB][hapmap];0.83[JPT][hapmap];0.90[ASN][1000 genomes]
rs11687634	0.86[JPT][hapmap];0.86[YRI][hapmap]
rs11688746	1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs11695089	1.00[CEU][hapmap];0.95[TSI][hapmap];0.81[EUR][1000 genomes]
rs12615265	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12615343	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12693195	1.00[CEU][hapmap]
rs12693196	1.00[CEU][hapmap];0.89[GIH][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12986652	0.86[YRI][hapmap];0.87[EUR][1000 genomes]
rs12987486	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12991282	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12991713	1.00[CEU][hapmap]
rs13000199	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13001067	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13009601	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.90[ASN][1000 genomes]
rs13014868	0.87[EUR][1000 genomes]
rs13026689	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13028216	1.00[CEU][hapmap];0.95[TSI][hapmap];0.82[YRI][hapmap];0.87[EUR][1000 genomes]
rs13029050	1.00[CEU][hapmap];0.81[YRI][hapmap];0.87[EUR][1000 genomes]
rs13035781	0.86[JPT][hapmap];0.84[YRI][hapmap];0.87[AFR][1000 genomes]
rs13411180	0.80[TSI][hapmap]
rs1399686	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs1399687	0.92[CHB][hapmap]
rs1515274	0.87[CHD][hapmap];0.89[MEX][hapmap];0.87[TSI][hapmap]
rs1515277	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs1515278	1.00[CHB][hapmap];0.95[CHD][hapmap];0.84[MEX][hapmap];0.83[ASN][1000 genomes]
rs1515304	1.00[CEU][hapmap];0.95[TSI][hapmap]
rs1515313	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1515314	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1554101	0.86[JPT][hapmap]
rs1606813	0.87[EUR][1000 genomes]
rs1606816	0.86[JPT][hapmap];0.91[YRI][hapmap]
rs16866810	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs16866819	1.00[CEU][hapmap];0.95[TSI][hapmap];0.82[YRI][hapmap];0.87[EUR][1000 genomes]
rs16866822	0.84[MEX][hapmap]
rs16866823	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs16866832	1.00[CEU][hapmap];0.89[GIH][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16866834	1.00[CEU][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes]
rs16866842	0.84[MEX][hapmap]
rs16866857	1.00[CEU][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16866876	0.90[CHD][hapmap];0.84[MEX][hapmap]
rs1877943	0.86[JPT][hapmap]
rs2138195	0.85[JPT][hapmap]
rs2176061	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2222031	1.00[CEU][hapmap];0.84[YRI][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2887110	1.00[CEU][hapmap];0.89[GIH][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34313722	0.81[EUR][1000 genomes]
rs34528783	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34545498	0.81[EUR][1000 genomes]
rs34663462	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35439427	0.87[EUR][1000 genomes]
rs35664499	0.87[EUR][1000 genomes]
rs36060902	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4600606	0.88[ASN][1000 genomes]
rs4894115	0.86[JPT][hapmap]
rs62176331	0.84[ASN][1000 genomes]
rs6717795	0.86[JPT][hapmap];0.91[YRI][hapmap]
rs6721295	1.00[CEU][hapmap]
rs6741622	0.88[ASN][1000 genomes]
rs6756679	0.92[CHB][hapmap]
rs71425640	0.85[EUR][1000 genomes]
rs73973307	0.87[EUR][1000 genomes]
rs7558351	0.86[JPT][hapmap]
rs7593595	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7601398	1.00[CEU][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs872158	0.86[JPT][hapmap];0.87[LWK][hapmap];0.91[YRI][hapmap]
rs872159	0.86[JPT][hapmap];0.91[YRI][hapmap];0.81[AFR][1000 genomes]
rs872160	0.86[JPT][hapmap];0.91[YRI][hapmap]
rs9288040	1.00[CEU][hapmap]
rs951425	0.84[JPT][hapmap]
rs951427	1.00[CEU][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes]
rs969231	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9750247	1.00[CHB][hapmap];0.90[JPT][hapmap];0.92[ASN][1000 genomes]
rs988289	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs988290	1.00[CEU][hapmap];0.86[YRI][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180477400-180488200	Weak transcription	Pancreas	Pancrea
2	chr2:180477800-180484200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr2:180478000-180483000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr2:180478800-180488200	Weak transcription	Lung	lung
5	chr2:180479000-180487400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr2:180479600-180483400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr2:180479600-180483600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr2:180480000-180483400	Weak transcription	NHEK	skin

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