Variant report

Variant	rs12986652
Chromosome Location	chr2:180475337-180475338
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:180473666..180476592-chr2:180484844..180487582,2	K562	blood:

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10048645	0.90[EUR][1000 genomes]
rs10179050	0.82[JPT][hapmap]
rs10189196	0.84[EUR][1000 genomes]
rs10189808	0.90[EUR][1000 genomes]
rs10191369	0.82[JPT][hapmap]
rs1115013	0.80[AFR][1000 genomes]
rs11683272	1.00[CEU][hapmap]
rs11683510	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11688895	1.00[CEU][hapmap]
rs11695089	1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11889907	0.80[AFR][1000 genomes]
rs12615265	0.88[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12615343	0.88[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12693195	1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12693196	0.90[EUR][1000 genomes]
rs12987486	0.88[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12991282	0.90[EUR][1000 genomes]
rs13000199	1.00[CEU][hapmap];0.86[YRI][hapmap];0.89[EUR][1000 genomes]
rs13001067	0.90[EUR][1000 genomes]
rs13014868	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13021168	0.80[AFR][1000 genomes]
rs13022986	0.80[AFR][1000 genomes]
rs13026689	0.90[YRI][hapmap];0.90[EUR][1000 genomes]
rs13028216	1.00[JPT][hapmap];0.95[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13029050	1.00[JPT][hapmap];0.95[YRI][hapmap];0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13411084	0.80[YRI][hapmap]
rs1515304	1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1515305	1.00[JPT][hapmap]
rs1515311	0.82[JPT][hapmap]
rs1515312	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1515313	0.90[EUR][1000 genomes]
rs1515314	0.90[EUR][1000 genomes]
rs1581175	0.80[AFR][1000 genomes]
rs1606813	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1606814	0.80[AFR][1000 genomes]
rs1606816	0.83[YRI][hapmap];0.80[AFR][1000 genomes]
rs16866810	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs16866819	1.00[JPT][hapmap];0.95[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16866823	1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16866832	0.86[YRI][hapmap];0.90[EUR][1000 genomes]
rs16866834	1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16866857	1.00[CEU][hapmap];0.88[YRI][hapmap];0.88[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs2138195	0.80[AFR][1000 genomes]
rs2176061	0.90[EUR][1000 genomes]
rs2222031	0.90[EUR][1000 genomes]
rs2887110	0.90[EUR][1000 genomes]
rs3106716	0.82[JPT][hapmap]
rs3112976	0.82[JPT][hapmap]
rs34313722	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34376589	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34528783	0.88[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs34545498	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34663462	0.88[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs35439427	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35664499	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs36060902	0.88[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs4530328	1.00[CEU][hapmap]
rs62176093	1.00[ASN][1000 genomes]
rs6717795	0.80[YRI][hapmap]
rs6721295	1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71425640	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73973307	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7581924	0.86[YRI][hapmap];0.87[EUR][1000 genomes]
rs7592221	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7593595	0.80[YRI][hapmap];0.90[EUR][1000 genomes]
rs7601398	0.88[YRI][hapmap];0.88[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7604253	1.00[JPT][hapmap]
rs872158	0.80[AFR][1000 genomes]
rs872159	0.80[YRI][hapmap]
rs872160	0.80[YRI][hapmap];0.80[AFR][1000 genomes]
rs9288040	1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs951427	1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs969231	0.90[EUR][1000 genomes]
rs988289	0.90[EUR][1000 genomes]
rs988290	0.87[EUR][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180471000-180476800	Weak transcription	Fetal Lung	lung
2	chr2:180471200-180477200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr2:180472000-180477000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr2:180473600-180478400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr2:180474200-180477000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr2:180474200-180477200	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr2:180474600-180476800	Weak transcription	Fetal Heart	heart
8	chr2:180475200-180476600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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