Variant report

Variant	rs13022986
Chromosome Location	chr2:180476800-180476801
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:180476329..180478000-chr2:180485125..180487896,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10169561	0.82[ASN][1000 genomes]
rs1115013	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11687634	0.98[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11692794	0.82[ASN][1000 genomes]
rs11889907	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12615265	0.91[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs12615343	0.91[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs12693197	0.84[ASN][1000 genomes]
rs12986652	0.80[AFR][1000 genomes]
rs12987486	0.91[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs13000027	0.82[ASN][1000 genomes]
rs13012946	0.82[ASN][1000 genomes]
rs13021168	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1554101	0.92[ASN][1000 genomes]
rs1581175	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1606814	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1606816	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16866857	0.91[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs1877943	0.92[ASN][1000 genomes]
rs2138195	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34528783	0.91[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs34663462	0.91[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs36060902	0.91[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs4414648	0.83[ASN][1000 genomes]
rs4511690	0.81[ASN][1000 genomes]
rs4894113	0.99[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4894115	0.92[ASN][1000 genomes]
rs56219418	0.97[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6717795	0.97[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6728581	0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs7558351	0.92[ASN][1000 genomes]
rs7601398	0.91[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs872158	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs872159	0.96[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs872160	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs951425	0.92[ASN][1000 genomes]
rs951426	0.92[ASN][1000 genomes]
rs979901	0.84[ASN][1000 genomes]
rs988288	0.84[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180471000-180476800	Weak transcription	Fetal Lung	lung
2	chr2:180471200-180477200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr2:180472000-180477000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr2:180473600-180478400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr2:180474200-180477000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr2:180474200-180477200	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr2:180474600-180476800	Weak transcription	Fetal Heart	heart
8	chr2:180476600-180479400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr2:180476600-180479600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr2:180476600-180479600	Enhancers	Osteobl	bone
11	chr2:180476800-180477800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr2:180476800-180477800	Enhancers	Fetal Lung	lung
13	chr2:180476800-180479200	Enhancers	Fetal Heart	heart

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