Variant report

Variant	rs16866857
Chromosome Location	chr2:180479461-180479462
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:180477852..180480440-chr2:180482454..180484640,2	K562	blood:

Extended variants
information (count: 115 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:115)

rs_ID	r²[population]
rs10048645	1.00[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10169561	0.86[JPT][hapmap]
rs10189196	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10189808	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1115013	0.91[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs11674582	1.00[CEU][hapmap]
rs11683272	1.00[CEU][hapmap]
rs11683510	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs11687634	0.86[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs11688895	1.00[CEU][hapmap]
rs11692794	0.86[JPT][hapmap]
rs11695089	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs11889907	0.91[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs12612821	0.93[ASN][1000 genomes]
rs12615265	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12615343	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12622221	0.95[CHB][hapmap];0.92[ASN][1000 genomes]
rs12693195	1.00[CEU][hapmap]
rs12693196	1.00[CEU][hapmap];0.84[CHB][hapmap];0.86[JPT][hapmap];0.84[YRI][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12693197	0.86[JPT][hapmap]
rs12986652	1.00[CEU][hapmap];0.88[YRI][hapmap];0.88[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12987486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12991282	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12991713	1.00[CEU][hapmap]
rs13000199	1.00[CEU][hapmap];0.84[CHB][hapmap];0.86[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13001067	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13004211	0.95[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs13005620	0.86[ASN][1000 genomes]
rs13012946	0.86[JPT][hapmap]
rs13014868	0.89[EUR][1000 genomes]
rs13021168	0.91[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs13022986	0.91[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs13026689	1.00[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13028216	1.00[CEU][hapmap];0.82[YRI][hapmap];0.89[EUR][1000 genomes]
rs13028491	0.86[ASN][1000 genomes]
rs13029050	1.00[CEU][hapmap];0.83[YRI][hapmap];0.89[EUR][1000 genomes]
rs13035781	0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.91[ASN][1000 genomes]
rs13411084	0.85[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs13411180	0.84[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs1356065	0.85[CHB][hapmap]
rs1356066	0.85[CHB][hapmap]
rs1515274	0.95[CHB][hapmap];0.90[JPT][hapmap];0.92[ASN][1000 genomes]
rs1515304	1.00[CEU][hapmap]
rs1515313	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1515314	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1515315	0.91[JPT][hapmap]
rs1515317	0.91[JPT][hapmap]
rs1533385	0.85[JPT][hapmap]
rs1533387	0.83[ASN][1000 genomes]
rs1554101	1.00[JPT][hapmap]
rs1581175	0.91[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs1606813	0.80[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1606814	0.91[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs1606816	0.86[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.91[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs16866810	1.00[CEU][hapmap];0.82[JPT][hapmap];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs16866815	0.85[CHB][hapmap]
rs16866819	1.00[CEU][hapmap];0.82[YRI][hapmap];0.89[EUR][1000 genomes]
rs16866822	0.84[CHB][hapmap];0.81[ASN][1000 genomes]
rs16866823	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs16866832	1.00[CEU][hapmap];0.84[CHB][hapmap];0.86[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16866834	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs16866842	0.84[CHB][hapmap];0.83[ASN][1000 genomes]
rs16866850	0.85[CHB][hapmap];0.83[ASN][1000 genomes]
rs16866865	0.95[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs16866871	0.95[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs16866876	0.84[CHB][hapmap]
rs17818050	0.81[JPT][hapmap]
rs1877943	0.80[CHB][hapmap];1.00[JPT][hapmap]
rs2138195	0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2176061	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2222031	1.00[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap];0.85[YRI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2367891	0.83[ASN][1000 genomes]
rs28792088	0.81[ASN][1000 genomes]
rs2887110	1.00[CEU][hapmap];0.84[CHB][hapmap];0.86[JPT][hapmap];0.83[YRI][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3106712	0.91[JPT][hapmap]
rs3106713	0.81[JPT][hapmap]
rs3106714	0.81[JPT][hapmap]
rs34313722	0.83[EUR][1000 genomes]
rs34528783	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34545498	0.83[EUR][1000 genomes]
rs34663462	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35046215	0.84[ASN][1000 genomes]
rs35413867	0.86[ASN][1000 genomes]
rs35439427	0.89[EUR][1000 genomes]
rs35664499	0.89[EUR][1000 genomes]
rs36017881	0.93[ASN][1000 genomes]
rs36060902	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4511690	0.86[JPT][hapmap]
rs4530328	1.00[CEU][hapmap]
rs4894113	0.90[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs4894115	1.00[JPT][hapmap]
rs56219418	0.88[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs58386506	0.82[ASN][1000 genomes]
rs61432525	0.84[ASN][1000 genomes]
rs62176301	0.86[ASN][1000 genomes]
rs62176328	0.84[ASN][1000 genomes]
rs6717795	0.86[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs6721295	1.00[CEU][hapmap]
rs71425640	0.87[EUR][1000 genomes]
rs73973307	0.89[EUR][1000 genomes]
rs7425514	0.85[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs7558351	0.80[CHB][hapmap];1.00[JPT][hapmap]
rs7581924	1.00[CEU][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7593595	1.00[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7601398	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs872158	0.85[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs872159	0.86[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs872160	0.86[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.91[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs9288040	1.00[CEU][hapmap]
rs951425	1.00[JPT][hapmap]
rs951427	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs969231	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs979901	0.91[JPT][hapmap]
rs988289	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs988290	1.00[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];0.88[YRI][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180476600-180479600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr2:180476600-180479600	Enhancers	Osteobl	bone
3	chr2:180477200-180479800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr2:180477200-180480000	Enhancers	Placenta Amnion	Placenta Amnion
5	chr2:180477200-180480000	Enhancers	NHLF	lung
6	chr2:180477400-180488200	Weak transcription	Pancreas	Pancrea
7	chr2:180477800-180484200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr2:180478000-180483000	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr2:180478200-180479600	Enhancers	HSMM	muscle
10	chr2:180478800-180479600	Enhancers	Fetal Lung	lung
11	chr2:180478800-180479800	Enhancers	HSMMtube	muscle
12	chr2:180478800-180481200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr2:180478800-180488200	Weak transcription	Lung	lung
14	chr2:180479000-180479600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr2:180479000-180479600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr2:180479000-180487400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr2:180479200-180480000	Enhancers	NHEK	skin

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