Variant report

Variant	rs16866850
Chromosome Location	chr2:180470347-180470348
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:180466180..180468206-chr2:180468630..180471085,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10048645	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs10169561	0.81[CHB][hapmap]
rs10189196	0.84[ASN][1000 genomes]
rs10189808	0.93[ASN][1000 genomes]
rs11692794	0.81[CHB][hapmap]
rs12615265	0.83[ASN][1000 genomes]
rs12615343	0.83[ASN][1000 genomes]
rs12622221	0.90[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12693196	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs12693197	0.84[CHB][hapmap]
rs12987486	0.83[ASN][1000 genomes]
rs12991282	0.93[ASN][1000 genomes]
rs13000199	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs13001067	0.91[ASN][1000 genomes]
rs13012946	0.80[CHB][hapmap]
rs13026689	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs13411084	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs13411180	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs1515310	0.89[JPT][hapmap]
rs1515313	0.91[ASN][1000 genomes]
rs1515314	0.91[ASN][1000 genomes]
rs1533387	0.86[ASN][1000 genomes]
rs16866810	0.85[CHB][hapmap];0.84[ASN][1000 genomes]
rs16866814	0.89[ASN][1000 genomes]
rs16866815	1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs16866822	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16866832	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs16866842	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16866857	0.85[CHB][hapmap];0.83[ASN][1000 genomes]
rs2176061	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs2222031	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs28792088	0.91[AFR][1000 genomes]
rs2887110	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs34528783	0.83[ASN][1000 genomes]
rs34663462	0.83[ASN][1000 genomes]
rs36060902	0.83[ASN][1000 genomes]
rs4511690	0.84[CHB][hapmap]
rs61432525	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62176301	0.91[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs62176328	0.91[AFR][1000 genomes]
rs62176331	0.91[AFR][1000 genomes]
rs73039384	0.80[ASN][1000 genomes]
rs7425514	1.00[CHB][hapmap];0.85[JPT][hapmap];0.93[ASN][1000 genomes]
rs7593595	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs7601398	0.85[CHB][hapmap];0.83[ASN][1000 genomes]
rs7608224	0.90[JPT][hapmap]
rs908287	0.85[CHB][hapmap];0.90[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs969231	0.93[ASN][1000 genomes]
rs979901	0.81[CHB][hapmap]
rs988289	0.93[ASN][1000 genomes]
rs988290	1.00[CHB][hapmap];0.93[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180461400-180470400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr2:180467600-180472000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr2:180468600-180471800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr2:180469800-180471000	Enhancers	Fetal Lung	lung
5	chr2:180470200-180470600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr2:180470200-180470600	Enhancers	HepG2	liver

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