Variant report

Variant	rs16866815
Chromosome Location	chr2:180451307-180451308
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10048645	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs10169561	0.81[CHB][hapmap]
rs10189196	0.80[ASN][1000 genomes]
rs10189808	0.83[ASN][1000 genomes]
rs10196048	1.00[CEU][hapmap]
rs10497542	0.92[CEU][hapmap];0.84[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10497543	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs11692794	0.81[CHB][hapmap]
rs12622221	0.85[JPT][hapmap]
rs12693196	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs12693197	0.84[CHB][hapmap]
rs12991282	0.83[ASN][1000 genomes]
rs13000199	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs13001067	0.84[ASN][1000 genomes]
rs13012946	0.80[CHB][hapmap]
rs13026689	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs13411084	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs13411180	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs1515306	0.84[JPT][hapmap]
rs1515310	0.94[JPT][hapmap]
rs1515313	0.84[ASN][1000 genomes]
rs1515314	0.84[ASN][1000 genomes]
rs16866810	0.85[CHB][hapmap];0.80[ASN][1000 genomes]
rs16866814	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16866822	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs16866832	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs16866838	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs16866842	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs16866850	1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs16866857	0.85[CHB][hapmap]
rs17817559	0.84[EUR][1000 genomes]
rs17818050	0.84[ASN][1000 genomes]
rs17819172	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17820146	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs2176061	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs2222031	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs2887110	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs4511690	0.84[CHB][hapmap]
rs61432525	0.88[ASN][1000 genomes]
rs6745521	1.00[CEU][hapmap]
rs73039384	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7425514	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs7584878	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs7593595	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs7601398	0.85[CHB][hapmap]
rs7608224	0.84[JPT][hapmap]
rs908287	0.85[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs969231	0.83[ASN][1000 genomes]
rs979901	0.81[CHB][hapmap]
rs988289	0.83[ASN][1000 genomes]
rs988290	1.00[CHB][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875471	chr2:180448523-180469778	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180435200-180461000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:180449600-180453200	Weak transcription	Psoas Muscle	Psoas
3	chr2:180449800-180456600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr2:180450000-180456400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr2:180450600-180453200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr2:180451200-180453200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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