Variant report

Variant	rs16866838
Chromosome Location	chr2:180459888-180459889
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10196048	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs10497542	0.92[CEU][hapmap]
rs10497543	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs16866814	0.87[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs16866815	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17768733	0.81[AFR][1000 genomes]
rs17817559	0.82[EUR][1000 genomes]
rs17819172	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17819812	0.82[AFR][1000 genomes]
rs17820146	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6745521	1.00[CEU][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7584878	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs908287	0.86[YRI][hapmap];0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875471	chr2:180448523-180469778	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180435200-180461000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:180456800-180460400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr2:180457800-180460600	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr2:180458000-180460800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr2:180458400-180460000	Enhancers	Fetal Heart	heart
6	chr2:180459200-180461400	Enhancers	Osteobl	bone
7	chr2:180459400-180460200	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr2:180459600-180460000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr2:180459800-180461200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links