Variant report

Variant	rs10497543
Chromosome Location	chr2:180509889-180509890
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10185282	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs10196048	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10497542	0.92[CEU][hapmap]
rs11904349	1.00[JPT][hapmap]
rs12614173	1.00[JPT][hapmap]
rs12614697	0.84[CEU][hapmap]
rs1515268	1.00[JPT][hapmap]
rs16866814	0.80[EUR][1000 genomes]
rs16866815	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs16866838	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs17819172	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17820146	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6745521	1.00[CEU][hapmap];0.87[GIH][hapmap];0.94[TSI][hapmap];0.87[EUR][1000 genomes]
rs7570466	1.00[JPT][hapmap]
rs7584878	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs952507	0.82[CHB][hapmap];0.83[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180502200-180510200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr2:180502400-180511600	Weak transcription	Fetal Heart	heart
3	chr2:180506800-180511200	Weak transcription	Fetal Brain Female	brain
4	chr2:180508400-180517000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr2:180509600-180510200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr2:180509600-180510200	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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