Variant report

Variant	rs1515268
Chromosome Location	chr2:180485215-180485216
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10196048	1.00[JPT][hapmap]
rs10497543	1.00[JPT][hapmap]
rs11904349	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12614173	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1515307	0.87[CEU][hapmap]
rs1554101	0.88[CEU][hapmap]
rs16866863	0.93[YRI][hapmap]
rs17768733	0.94[YRI][hapmap];0.86[AFR][1000 genomes]
rs17819812	0.93[YRI][hapmap];0.84[AFR][1000 genomes]
rs1877942	1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs2138193	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3106716	0.81[CEU][hapmap]
rs4894114	1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs4894115	0.88[CEU][hapmap]
rs7570466	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7608208	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs951424	0.94[YRI][hapmap];0.98[AFR][1000 genomes]
rs951425	0.85[CEU][hapmap]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180477400-180488200	Weak transcription	Pancreas	Pancrea
2	chr2:180478800-180488200	Weak transcription	Lung	lung
3	chr2:180479000-180487400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr2:180483400-180486400	Weak transcription	Fetal Heart	heart
5	chr2:180484000-180487200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr2:180484200-180485400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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