Variant report

Variant	rs4894114
Chromosome Location	chr2:180483481-180483482
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:180477852..180480440-chr2:180482454..180484640,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11681178	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11683314	1.00[CHB][hapmap];0.82[GIH][hapmap]
rs11688721	1.00[CHB][hapmap]
rs11689513	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11901866	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13000183	1.00[CHB][hapmap];0.82[GIH][hapmap]
rs13012626	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13014208	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13018742	1.00[CHB][hapmap]
rs1356062	1.00[CHB][hapmap]
rs1356063	1.00[CHB][hapmap]
rs1515268	1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs1554103	0.81[CEU][hapmap];0.91[TSI][hapmap]
rs1581175	0.85[CEU][hapmap]
rs1606815	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1606816	0.85[CEU][hapmap]
rs16866863	0.93[YRI][hapmap]
rs17766255	0.84[CEU][hapmap];0.88[GIH][hapmap];0.86[MEX][hapmap];0.81[TSI][hapmap]
rs17767480	1.00[CHB][hapmap]
rs17767681	1.00[CHB][hapmap]
rs17768733	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17768920	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17818499	1.00[CHB][hapmap]
rs17818703	1.00[CHB][hapmap]
rs17819812	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17820073	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1877942	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1996240	0.94[CEU][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2138195	0.85[CEU][hapmap]
rs3106693	0.81[CEU][hapmap]
rs3106694	0.81[CEU][hapmap];0.91[TSI][hapmap]
rs35427104	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35877676	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4893877	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4894110	0.84[CEU][hapmap];0.88[GIH][hapmap];0.81[TSI][hapmap]
rs4894111	1.00[CHB][hapmap]
rs66812964	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs67053349	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6717795	0.85[CEU][hapmap]
rs6738101	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6741320	0.81[CEU][hapmap]
rs6743733	0.95[CEU][hapmap];0.88[CHD][hapmap];0.97[GIH][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7608208	0.91[ASW][hapmap];1.00[CHB][hapmap];0.89[LWK][hapmap];0.87[MEX][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs872158	0.85[CEU][hapmap]
rs872159	0.85[CEU][hapmap]
rs872160	0.84[CEU][hapmap]
rs951424	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs954649	0.95[CEU][hapmap];0.88[CHD][hapmap];0.97[GIH][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180477400-180488200	Weak transcription	Pancreas	Pancrea
2	chr2:180477800-180484200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr2:180478800-180488200	Weak transcription	Lung	lung
4	chr2:180479000-180487400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr2:180479600-180483600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr2:180483000-180484000	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr2:180483400-180484200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr2:180483400-180484200	Enhancers	NHEK	skin
9	chr2:180483400-180486400	Weak transcription	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links