Variant report

Variant	rs17766255
Chromosome Location	chr2:180440806-180440807
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11681178	1.00[ASW][hapmap];0.84[CEU][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.81[TSI][hapmap];0.86[AMR][1000 genomes]
rs11683314	0.92[CHD][hapmap];0.89[ASN][1000 genomes]
rs11688721	0.89[ASN][1000 genomes]
rs11689513	0.84[CEU][hapmap]
rs11901866	0.84[CEU][hapmap];0.83[AMR][1000 genomes]
rs12988783	1.00[CHB][hapmap];0.83[CHD][hapmap];0.86[MEX][hapmap];0.81[AMR][1000 genomes]
rs13000183	0.92[CHD][hapmap];0.89[ASN][1000 genomes]
rs13012626	0.84[CEU][hapmap];0.86[AMR][1000 genomes]
rs13014208	0.84[CEU][hapmap];0.86[AMR][1000 genomes]
rs13018742	0.89[ASN][1000 genomes]
rs1356062	0.89[ASN][1000 genomes]
rs1356063	0.89[ASN][1000 genomes]
rs1515305	1.00[CHB][hapmap]
rs1606815	0.86[AMR][1000 genomes]
rs17767480	0.89[ASN][1000 genomes]
rs17767681	0.89[ASN][1000 genomes]
rs17768733	0.84[CEU][hapmap]
rs17768920	0.84[CEU][hapmap];0.86[AMR][1000 genomes]
rs17818499	0.89[ASN][1000 genomes]
rs17818703	0.89[ASN][1000 genomes]
rs17819812	0.84[CEU][hapmap];0.88[GIH][hapmap];0.86[MEX][hapmap];0.81[TSI][hapmap]
rs17820073	0.84[CEU][hapmap];0.86[AMR][1000 genomes]
rs1877942	0.84[CEU][hapmap]
rs1996240	0.81[AMR][1000 genomes]
rs34105987	0.89[ASN][1000 genomes]
rs35427104	0.83[AMR][1000 genomes]
rs35877676	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4893876	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4893877	0.84[CEU][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4894110	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4894111	0.89[ASN][1000 genomes]
rs4894114	0.84[CEU][hapmap];0.88[GIH][hapmap];0.86[MEX][hapmap];0.81[TSI][hapmap]
rs66812964	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67053349	0.86[AMR][1000 genomes]
rs6743733	0.84[GIH][hapmap];0.92[MEX][hapmap];0.81[TSI][hapmap];0.83[AMR][1000 genomes]
rs67636064	0.89[ASN][1000 genomes]
rs72958001	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs951424	0.84[CEU][hapmap]
rs954649	0.84[GIH][hapmap];0.85[MEX][hapmap];0.81[TSI][hapmap];0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521639	chr2:180439541-180443444	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180433000-180445600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:180435200-180461000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:180435400-180446400	Weak transcription	Fetal Kidney	kidney
4	chr2:180437600-180445200	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr2:180439000-180441000	Enhancers	HepG2	liver
6	chr2:180439400-180443200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr2:180439400-180445000	Weak transcription	Stomach Mucosa	stomach
8	chr2:180439600-180443000	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr2:180439800-180443000	Weak transcription	Fetal Intestine Large	intestine
10	chr2:180439800-180445200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr2:180439800-180445200	Weak transcription	Fetal Lung	lung
12	chr2:180439800-180446400	Enhancers	Liver	Liver
13	chr2:180440800-180441200	Enhancers	Gastric	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links