Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr2:180449348-180449548	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ZNF385B	TF binding region

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11681178	0.86[AMR][1000 genomes]
rs11683314	0.89[ASN][1000 genomes]
rs11688721	0.89[ASN][1000 genomes]
rs11901866	0.83[AMR][1000 genomes]
rs12988783	0.81[AMR][1000 genomes]
rs13000183	0.89[ASN][1000 genomes]
rs13012626	0.86[AMR][1000 genomes]
rs13014208	0.86[AMR][1000 genomes]
rs13018742	0.89[ASN][1000 genomes]
rs1356062	0.89[ASN][1000 genomes]
rs1356063	0.89[ASN][1000 genomes]
rs1606815	0.86[AMR][1000 genomes]
rs17766255	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17767480	0.89[ASN][1000 genomes]
rs17767681	0.89[ASN][1000 genomes]
rs17768920	0.86[AMR][1000 genomes]
rs17818499	0.89[ASN][1000 genomes]
rs17818703	0.89[ASN][1000 genomes]
rs17820073	0.86[AMR][1000 genomes]
rs1996240	0.81[AMR][1000 genomes]
rs34105987	0.89[ASN][1000 genomes]
rs35427104	0.83[AMR][1000 genomes]
rs35877676	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4893876	1.00[ASN][1000 genomes]
rs4893877	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4894110	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4894111	0.89[ASN][1000 genomes]
rs66812964	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67053349	0.86[AMR][1000 genomes]
rs6743733	0.83[AMR][1000 genomes]
rs67636064	0.89[ASN][1000 genomes]
rs954649	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875471	chr2:180448523-180469778	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180435200-180461000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:180445200-180450600	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr2:180449200-180449800	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr2:180449200-180450000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr2:180449200-180450000	Enhancers	Liver	Liver
6	chr2:180449200-180450000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr2:180449200-180450000	Enhancers	Fetal Heart	heart
8	chr2:180449200-180450200	Enhancers	HepG2	liver
9	chr2:180449200-180451200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr2:180449400-180449600	Enhancers	Psoas Muscle	Psoas
11	chr2:180449400-180449800	Enhancers	Right Atrium	heart
12	chr2:180449400-180449800	Enhancers	Hela-S3	cervix

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