Variant report

Variant	rs1606815
Chromosome Location	chr2:180477476-180477477
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:180476329..180478000-chr2:180485125..180487896,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11681178	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11901866	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13012626	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13014208	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17766255	0.86[AMR][1000 genomes]
rs17768733	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17768920	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17819812	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17820073	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1877942	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1996240	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35427104	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35877676	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4893877	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4894110	0.86[AMR][1000 genomes]
rs4894114	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66812964	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs67053349	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6738101	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6743733	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72958001	0.86[AMR][1000 genomes]
rs951424	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs954649	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180473600-180478400	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr2:180476600-180479400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr2:180476600-180479600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr2:180476600-180479600	Enhancers	Osteobl	bone
5	chr2:180476800-180477800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr2:180476800-180477800	Enhancers	Fetal Lung	lung
7	chr2:180476800-180479200	Enhancers	Fetal Heart	heart
8	chr2:180477000-180477600	Enhancers	HSMMtube	muscle
9	chr2:180477000-180477800	Enhancers	Colon Smooth Muscle	Colon
10	chr2:180477000-180478200	Enhancers	NHEK	skin
11	chr2:180477000-180478800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr2:180477000-180478800	Enhancers	Adipose Nuclei	Adipose
13	chr2:180477000-180478800	Enhancers	Ovary	ovary
14	chr2:180477000-180479000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr2:180477200-180477800	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr2:180477200-180477800	Enhancers	Aorta	Aorta
17	chr2:180477200-180478000	Enhancers	Duodenum Smooth Muscle	Duodenum
18	chr2:180477200-180478000	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr2:180477200-180478400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr2:180477200-180478800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr2:180477200-180478800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr2:180477200-180478800	Enhancers	Lung	lung
23	chr2:180477200-180478800	Enhancers	Right Atrium	heart
24	chr2:180477200-180479000	Enhancers	Rectal Smooth Muscle	rectum
25	chr2:180477200-180479800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr2:180477200-180480000	Enhancers	Placenta Amnion	Placenta Amnion
27	chr2:180477200-180480000	Enhancers	NHLF	lung
28	chr2:180477400-180477800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr2:180477400-180477800	Enhancers	HSMM	muscle
30	chr2:180477400-180479000	Enhancers	Placenta	Placenta
31	chr2:180477400-180488200	Weak transcription	Pancreas	Pancrea

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