Variant report

Variant	rs6743733
Chromosome Location	chr2:180511629-180511630
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:180443407..180444331-chr2:180511344..180511849,2	MCF-7	breast:
2	chr2:180445086..180446209-chr2:180511232..180512253,24	MCF-7	breast:
3	chr2:180445162..180446091-chr2:180511317..180512194,3	MCF-7	breast:
4	chr2:180311272..180312157-chr2:180511429..180512001,2	MCF-7	breast:
5	chr2:180443824..180444659-chr2:180511032..180511878,4	MCF-7	breast:
6	chr2:180459993..180460542-chr2:180511399..180512209,2	MCF-7	breast:
7	chr2:180438670..180439638-chr2:180510962..180512189,4	MCF-7	breast:
8	chr2:180445086..180446084-chr2:180511232..180512253,14	MCF-7	breast:

No data

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10180972	0.88[CHD][hapmap];0.81[ASN][1000 genomes]
rs10183460	0.81[ASN][1000 genomes]
rs10497545	0.88[CHD][hapmap];0.81[ASN][1000 genomes]
rs11681178	0.95[CEU][hapmap];0.89[CHD][hapmap];0.97[GIH][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11683314	0.84[GIH][hapmap]
rs11689513	0.95[CEU][hapmap]
rs11901866	0.95[CEU][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12373813	0.81[ASN][1000 genomes]
rs13000183	0.84[GIH][hapmap]
rs13012626	0.94[CEU][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13014208	0.95[CEU][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13432838	0.81[ASN][1000 genomes]
rs1554103	0.81[CEU][hapmap];0.91[TSI][hapmap]
rs1581175	0.80[CEU][hapmap]
rs1606815	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1606816	0.80[CEU][hapmap]
rs17766255	0.84[GIH][hapmap];0.92[MEX][hapmap];0.81[TSI][hapmap];0.83[AMR][1000 genomes]
rs17768733	0.95[CEU][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17768920	0.95[CEU][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17770666	0.87[CHD][hapmap]
rs17771213	0.81[ASN][1000 genomes]
rs17771279	0.81[ASN][1000 genomes]
rs17819812	0.95[CEU][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17820073	0.95[CEU][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1877942	0.95[CEU][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1996240	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2138193	1.00[CHB][hapmap]
rs3106693	0.81[CEU][hapmap]
rs3106694	0.81[CEU][hapmap];0.91[TSI][hapmap]
rs34008381	0.81[ASN][1000 genomes]
rs35427104	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35877676	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4893877	0.95[CEU][hapmap];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4893879	0.88[CHD][hapmap];0.81[ASN][1000 genomes]
rs4893880	0.81[ASN][1000 genomes]
rs4894110	0.84[GIH][hapmap];0.85[MEX][hapmap];0.81[TSI][hapmap];0.83[AMR][1000 genomes]
rs4894114	0.95[CEU][hapmap];0.88[CHD][hapmap];0.97[GIH][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs66812964	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs67053349	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6717795	0.80[CEU][hapmap]
rs6721277	0.81[ASN][1000 genomes]
rs6738101	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6741320	0.81[CEU][hapmap]
rs71405993	0.81[ASN][1000 genomes]
rs72958001	0.83[AMR][1000 genomes]
rs872158	0.80[CEU][hapmap]
rs872159	0.80[CEU][hapmap]
rs951424	0.95[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs954649	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180508400-180517000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr2:180510200-180512200	Enhancers	Fetal Lung	lung
3	chr2:180510200-180512400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr2:180510600-180513600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr2:180511000-180512200	Enhancers	Liver	Liver
6	chr2:180511000-180513200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr2:180511200-180512200	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr2:180511200-180512800	Enhancers	Fetal Muscle Leg	muscle
9	chr2:180511200-180513000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr2:180511600-180512000	Enhancers	Fetal Heart	heart

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