Variant report

Variant	rs34008381
Chromosome Location	chr2:180542822-180542823
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10180972	1.00[ASN][1000 genomes]
rs10183460	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10196293	0.86[ASN][1000 genomes]
rs10497545	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12373813	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13416735	0.93[ASN][1000 genomes]
rs13432838	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17771213	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17771279	1.00[ASN][1000 genomes]
rs1996240	0.81[ASN][1000 genomes]
rs35427104	0.81[ASN][1000 genomes]
rs4893879	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4893880	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56082800	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6721277	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6743733	0.81[ASN][1000 genomes]
rs71405993	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs954649	0.81[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180540400-180571200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:180540600-180543000	Weak transcription	Pancreas	Pancrea
3	chr2:180541200-180543000	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr2:180541200-180543200	Enhancers	Fetal Lung	lung
5	chr2:180541200-180543800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr2:180541200-180544000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr2:180541400-180543200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr2:180541400-180543200	Enhancers	Colon Smooth Muscle	Colon
9	chr2:180541600-180543000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr2:180541800-180543000	Weak transcription	Left Ventricle	heart
11	chr2:180542000-180543000	Weak transcription	Fetal Muscle Leg	muscle
12	chr2:180542000-180543000	Enhancers	HSMMtube	muscle
13	chr2:180542200-180543000	Enhancers	Fetal Heart	heart
14	chr2:180542200-180543000	Weak transcription	Psoas Muscle	Psoas
15	chr2:180542200-180543600	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr2:180542400-180543400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr2:180542600-180543200	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr2:180542800-180543000	Enhancers	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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