Variant report

Variant	rs13416735
Chromosome Location	chr2:180547610-180547611
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10180972	0.93[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10183460	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10196293	1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10497545	0.93[ASN][1000 genomes]
rs10930882	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs11690551	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs12373813	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13432838	0.93[ASN][1000 genomes]
rs1515288	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs17771213	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17771279	0.93[ASN][1000 genomes]
rs34008381	0.93[ASN][1000 genomes]
rs4893879	0.93[ASN][1000 genomes]
rs4893880	0.93[ASN][1000 genomes]
rs56082800	0.80[ASN][1000 genomes]
rs6721277	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs71405993	0.93[ASN][1000 genomes]
rs72958961	0.86[AFR][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180540400-180571200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:180544000-180557200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr2:180547400-180551600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr2:180547600-180551200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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