Variant report

Variant	rs4893880
Chromosome Location	chr2:180542523-180542524
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10180972	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10183460	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10196293	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs10497545	0.89[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12373813	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13416735	0.93[ASN][1000 genomes]
rs13432838	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1515288	1.00[CHB][hapmap]
rs17770666	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs17771213	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17771279	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1877945	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs1996240	0.81[ASN][1000 genomes]
rs34008381	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35427104	0.81[ASN][1000 genomes]
rs4893879	0.89[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56082800	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6721277	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6743733	0.81[ASN][1000 genomes]
rs71405993	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs932117	1.00[CHB][hapmap]
rs954649	0.81[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180540400-180571200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:180540600-180543000	Weak transcription	Pancreas	Pancrea
3	chr2:180541200-180542600	Enhancers	Liver	Liver
4	chr2:180541200-180543000	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr2:180541200-180543200	Enhancers	Fetal Lung	lung
6	chr2:180541200-180543800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr2:180541200-180544000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr2:180541400-180542600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr2:180541400-180542600	Enhancers	Brain Anterior Caudate	brain
10	chr2:180541400-180542600	Enhancers	HSMM	muscle
11	chr2:180541400-180543200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr2:180541400-180543200	Enhancers	Colon Smooth Muscle	Colon
13	chr2:180541600-180542800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr2:180541600-180543000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr2:180541800-180543000	Weak transcription	Left Ventricle	heart
16	chr2:180542000-180542800	Weak transcription	Fetal Brain Male	brain
17	chr2:180542000-180543000	Weak transcription	Fetal Muscle Leg	muscle
18	chr2:180542000-180543000	Enhancers	HSMMtube	muscle
19	chr2:180542200-180542600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr2:180542200-180543000	Enhancers	Fetal Heart	heart
21	chr2:180542200-180543000	Weak transcription	Psoas Muscle	Psoas
22	chr2:180542200-180543600	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr2:180542400-180542600	Enhancers	Fetal Intestine Large	intestine
24	chr2:180542400-180543400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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