Variant report

Variant	rs10497545
Chromosome Location	chr2:180520419-180520420
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10174391	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs10178119	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs10180972	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[ASN][1000 genomes]
rs10183460	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10196293	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs10201428	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs12373813	0.89[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13416735	0.93[ASN][1000 genomes]
rs13432838	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1399689	0.91[YRI][hapmap]
rs1515288	1.00[CHB][hapmap]
rs1515292	0.91[YRI][hapmap]
rs17770666	1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap];0.91[YRI][hapmap]
rs17771213	0.89[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17771279	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17819812	0.88[CHD][hapmap]
rs1877944	0.82[YRI][hapmap];0.94[AFR][1000 genomes]
rs1877945	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap]
rs1996240	0.81[ASN][1000 genomes]
rs34008381	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35427104	0.81[ASN][1000 genomes]
rs4893879	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4893880	0.89[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56082800	0.86[ASN][1000 genomes]
rs6721277	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6743733	0.88[CHD][hapmap];0.81[ASN][1000 genomes]
rs71405993	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs932117	1.00[CHB][hapmap];0.91[YRI][hapmap]
rs952507	0.87[AFR][1000 genomes]
rs954649	0.88[CHD][hapmap];0.81[ASN][1000 genomes]
rs9789776	0.94[AFR][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180517400-180521400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr2:180519400-180520600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr2:180519800-180520800	Enhancers	Fetal Brain Male	brain
4	chr2:180519800-180521200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr2:180520200-180521000	Enhancers	Muscle Satellite Cultured Cells	--

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