Variant report

Variant	rs1399689
Chromosome Location	chr2:180557720-180557721
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10174391	0.88[YRI][hapmap]
rs10178119	0.91[YRI][hapmap]
rs10183460	0.86[AFR][1000 genomes]
rs10201428	0.90[YRI][hapmap]
rs10497545	0.91[YRI][hapmap]
rs10930882	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.83[TSI][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11690551	0.85[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.80[TSI][hapmap];0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12373813	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs1515288	0.85[CEU][hapmap];0.83[AMR][1000 genomes]
rs1515292	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17770666	1.00[YRI][hapmap]
rs17771213	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs1877944	0.87[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1877945	1.00[YRI][hapmap]
rs2203462	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4893879	0.91[YRI][hapmap]
rs72958961	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7570466	1.00[JPT][hapmap]
rs932117	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs952507	1.00[JPT][hapmap]
rs9789776	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180540400-180571200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:180552400-180566400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr2:180553600-180558600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr2:180555400-180557800	Enhancers	Muscle Satellite Cultured Cells	--
5	chr2:180555600-180557800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr2:180556400-180566000	Weak transcription	HSMM	muscle
7	chr2:180556800-180559000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr2:180557200-180557800	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr2:180557200-180557800	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr2:180557400-180557800	Enhancers	NHDF-Ad	bronchial

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