Variant report

Variant	rs10930882
Chromosome Location	chr2:180558930-180558931
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10180972	0.88[ASW][hapmap];0.92[LWK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs10196293	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs11690551	1.00[ASW][hapmap];1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.93[MEX][hapmap];0.89[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12373725	0.84[CEU][hapmap];0.93[TSI][hapmap]
rs13416735	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs1399689	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.83[TSI][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1515288	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1515289	0.89[CEU][hapmap]
rs1515292	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1877944	0.82[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2203462	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs72958961	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7570466	1.00[JPT][hapmap]
rs932117	0.85[CEU][hapmap];0.85[AMR][1000 genomes]
rs952507	1.00[JPT][hapmap]
rs9789776	0.93[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180540400-180571200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:180552400-180566400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr2:180556400-180566000	Weak transcription	HSMM	muscle
4	chr2:180556800-180559000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr2:180557800-180559800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr2:180558600-180559000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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