Variant report

Variant	rs10180972
Chromosome Location	chr2:180546744-180546745
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:180545732..180548071-chr2:180550130..180552936,2	K562	blood:
2	chr2:180545707..180548071-chr2:180550130..180552377,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10183460	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10196293	1.00[CHB][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10497545	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[ASN][1000 genomes]
rs10930882	0.88[ASW][hapmap];0.92[LWK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs11690551	0.88[ASW][hapmap];0.94[LWK][hapmap];0.87[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs12373813	1.00[CHB][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13416735	0.93[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13432838	1.00[ASN][1000 genomes]
rs1515288	1.00[CHB][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs17770666	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap]
rs17771213	1.00[CHB][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17771279	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17819812	0.88[CHD][hapmap]
rs1877945	1.00[CHB][hapmap]
rs1996240	0.81[ASN][1000 genomes]
rs34008381	1.00[ASN][1000 genomes]
rs35427104	0.81[ASN][1000 genomes]
rs4893879	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[ASN][1000 genomes]
rs4893880	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs56082800	0.86[ASN][1000 genomes]
rs6721277	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6743733	0.88[CHD][hapmap];0.81[ASN][1000 genomes]
rs71405993	1.00[ASN][1000 genomes]
rs72958961	0.90[AFR][1000 genomes]
rs932117	1.00[CHB][hapmap]
rs954649	0.88[CHD][hapmap];0.81[ASN][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180540400-180571200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:180543400-180546800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr2:180544000-180557200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr2:180544400-180546800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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