Variant report

Variant	rs954649
Chromosome Location	chr2:180510494-180510495
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10180972	0.88[CHD][hapmap];0.81[ASN][1000 genomes]
rs10183460	0.81[ASN][1000 genomes]
rs10497545	0.88[CHD][hapmap];0.81[ASN][1000 genomes]
rs11681178	0.95[CEU][hapmap];0.89[CHD][hapmap];0.97[GIH][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11683314	0.84[GIH][hapmap]
rs11689513	0.95[CEU][hapmap]
rs11901866	0.95[CEU][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12373813	0.81[ASN][1000 genomes]
rs13000183	0.84[GIH][hapmap]
rs13012626	0.94[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13014208	0.95[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13432838	0.81[ASN][1000 genomes]
rs1554103	0.81[CEU][hapmap];0.89[LWK][hapmap];0.91[TSI][hapmap]
rs1581175	0.80[CEU][hapmap]
rs1606815	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1606816	0.80[CEU][hapmap]
rs17766255	0.84[GIH][hapmap];0.85[MEX][hapmap];0.81[TSI][hapmap];0.81[AMR][1000 genomes]
rs17768733	0.95[CEU][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17768920	0.95[CEU][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17770666	0.87[CHD][hapmap]
rs17771213	0.81[ASN][1000 genomes]
rs17771279	0.81[ASN][1000 genomes]
rs17819812	0.95[CEU][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17820073	0.95[CEU][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1877942	0.95[CEU][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1996240	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2138193	1.00[CHB][hapmap]
rs3106693	0.81[CEU][hapmap];0.84[AFR][1000 genomes]
rs3106694	0.81[CEU][hapmap];0.89[LWK][hapmap];0.91[TSI][hapmap];0.84[AFR][1000 genomes]
rs34008381	0.81[ASN][1000 genomes]
rs35427104	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35877676	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4893877	0.95[CEU][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4893879	0.88[CHD][hapmap];0.81[ASN][1000 genomes]
rs4893880	0.81[ASN][1000 genomes]
rs4894110	0.84[GIH][hapmap];0.81[TSI][hapmap];0.81[AMR][1000 genomes]
rs4894114	0.95[CEU][hapmap];0.88[CHD][hapmap];0.97[GIH][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs66812964	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs67053349	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6717795	0.80[CEU][hapmap]
rs6721277	0.81[ASN][1000 genomes]
rs6738101	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6741320	0.81[CEU][hapmap];0.90[YRI][hapmap]
rs6743733	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71405993	0.81[ASN][1000 genomes]
rs72958001	0.81[AMR][1000 genomes]
rs872158	0.80[CEU][hapmap]
rs872159	0.80[CEU][hapmap]
rs951424	0.95[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180502400-180511600	Weak transcription	Fetal Heart	heart
2	chr2:180506800-180511200	Weak transcription	Fetal Brain Female	brain
3	chr2:180508400-180517000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr2:180510200-180511200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr2:180510200-180512200	Enhancers	Fetal Lung	lung
6	chr2:180510200-180512400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr2:180510400-180511400	Enhancers	HepG2	liver

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