Variant report

Variant	rs4894110
Chromosome Location	chr2:180444594-180444595
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:180443824..180444659-chr2:180511032..180511878,4	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11681178	1.00[ASW][hapmap];0.84[CEU][hapmap];0.88[GIH][hapmap];0.93[MEX][hapmap];0.90[MKK][hapmap];0.81[TSI][hapmap];0.86[AMR][1000 genomes]
rs11683314	0.83[CHD][hapmap]
rs11689513	0.84[CEU][hapmap]
rs11901866	0.84[CEU][hapmap];0.83[AMR][1000 genomes]
rs12988783	0.81[AMR][1000 genomes]
rs13000183	0.83[CHD][hapmap]
rs13012626	0.83[CEU][hapmap];0.86[AMR][1000 genomes]
rs13014208	0.84[CEU][hapmap];0.86[AMR][1000 genomes]
rs1606815	0.86[AMR][1000 genomes]
rs17766255	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17768733	0.84[CEU][hapmap]
rs17768920	0.84[CEU][hapmap];0.86[AMR][1000 genomes]
rs17819812	0.84[CEU][hapmap];0.88[GIH][hapmap];0.81[TSI][hapmap]
rs17820073	0.84[CEU][hapmap];0.86[AMR][1000 genomes]
rs1877942	0.84[CEU][hapmap]
rs1996240	0.81[AMR][1000 genomes]
rs35427104	0.83[AMR][1000 genomes]
rs35877676	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4893876	0.89[ASN][1000 genomes]
rs4893877	0.84[CEU][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4894114	0.84[CEU][hapmap];0.88[GIH][hapmap];0.81[TSI][hapmap]
rs66812964	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs67053349	0.86[AMR][1000 genomes]
rs6743733	0.84[GIH][hapmap];0.85[MEX][hapmap];0.81[TSI][hapmap];0.83[AMR][1000 genomes]
rs72958001	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs951424	0.84[CEU][hapmap]
rs954649	0.84[GIH][hapmap];0.81[TSI][hapmap];0.81[AMR][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180433000-180445600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:180435200-180461000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:180435400-180446400	Weak transcription	Fetal Kidney	kidney
4	chr2:180437600-180445200	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr2:180439400-180445000	Weak transcription	Stomach Mucosa	stomach
6	chr2:180439800-180445200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr2:180439800-180445200	Weak transcription	Fetal Lung	lung
8	chr2:180439800-180446400	Enhancers	Liver	Liver
9	chr2:180441200-180445200	Weak transcription	Pancreas	Pancrea
10	chr2:180442400-180446800	Enhancers	HepG2	liver
11	chr2:180443600-180444600	Weak transcription	Fetal Intestine Small	intestine
12	chr2:180443600-180445000	Weak transcription	Fetal Intestine Large	intestine
13	chr2:180444200-180445200	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr2:180444200-180445800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links