Variant report

Variant	rs17768733
Chromosome Location	chr2:180484207-180484208
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:180477852..180480440-chr2:180482454..180484640,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11681178	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11683314	1.00[CHB][hapmap]
rs11689513	0.80[CEU][hapmap]
rs11901866	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13000183	1.00[CHB][hapmap]
rs13012626	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13014208	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1515268	0.94[YRI][hapmap];0.86[AFR][1000 genomes]
rs1581175	0.82[CEU][hapmap]
rs1606815	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1606816	0.82[CEU][hapmap]
rs16866838	0.81[AFR][1000 genomes]
rs16866863	0.86[YRI][hapmap]
rs17766255	0.84[CEU][hapmap]
rs17768920	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17819812	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17820073	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1877942	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1996240	0.95[CEU][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2138195	0.82[CEU][hapmap]
rs35427104	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35877676	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4893877	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4894110	0.84[CEU][hapmap]
rs4894114	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66812964	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs67053349	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6717795	0.82[CEU][hapmap]
rs6738101	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6743733	0.95[CEU][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7608208	1.00[CHB][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes]
rs872158	0.85[CEU][hapmap]
rs872159	0.82[CEU][hapmap]
rs872160	0.81[CEU][hapmap]
rs951424	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs954649	0.95[CEU][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180477400-180488200	Weak transcription	Pancreas	Pancrea
2	chr2:180478800-180488200	Weak transcription	Lung	lung
3	chr2:180479000-180487400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr2:180483400-180486400	Weak transcription	Fetal Heart	heart
5	chr2:180483600-180484400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr2:180484000-180487200	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr2:180484200-180485400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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