Variant report

Variant	rs872159
Chromosome Location	chr2:180479379-180479380
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:180477852..180480440-chr2:180482454..180484640,2	K562	blood:

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10048645	0.86[JPT][hapmap];0.85[YRI][hapmap]
rs10169561	0.81[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs1115013	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11681178	0.85[CEU][hapmap]
rs11687634	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11692794	0.81[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs11889907	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11901866	0.82[CEU][hapmap]
rs12615265	0.88[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs12615343	0.88[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs12622221	0.81[CHB][hapmap]
rs12693196	0.86[JPT][hapmap]
rs12693197	0.85[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs12986652	0.80[YRI][hapmap]
rs12987486	0.88[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs13000027	0.82[ASN][1000 genomes]
rs13000199	0.86[JPT][hapmap]
rs13004211	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs13012626	0.81[CEU][hapmap]
rs13012946	0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs13014208	0.82[CEU][hapmap]
rs13021168	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13022986	0.96[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13026689	0.86[JPT][hapmap]
rs13035781	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs13411084	0.86[JPT][hapmap]
rs13411180	0.86[JPT][hapmap]
rs1515274	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs1515315	0.91[JPT][hapmap]
rs1515317	0.91[JPT][hapmap]
rs1533385	0.85[JPT][hapmap]
rs1554101	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1581175	1.00[CEU][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1606814	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1606816	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16866810	0.81[JPT][hapmap]
rs16866832	0.86[JPT][hapmap]
rs16866857	0.86[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs16866865	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs16866871	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs17768733	0.82[CEU][hapmap]
rs17768920	0.82[CEU][hapmap]
rs17818050	0.81[JPT][hapmap]
rs17819812	0.85[CEU][hapmap]
rs17820073	0.82[CEU][hapmap]
rs1877942	0.82[CEU][hapmap]
rs1877943	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2138195	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2176061	0.82[JPT][hapmap];0.82[YRI][hapmap]
rs2222031	0.91[JPT][hapmap]
rs2887110	0.86[JPT][hapmap];0.83[YRI][hapmap]
rs3106712	0.91[JPT][hapmap]
rs3106713	0.81[JPT][hapmap]
rs3106714	0.81[JPT][hapmap]
rs34528783	0.88[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs34663462	0.88[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs36060902	0.88[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs4414648	0.83[ASN][1000 genomes]
rs4511690	0.85[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs4893877	0.82[CEU][hapmap]
rs4894113	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4894114	0.85[CEU][hapmap]
rs4894115	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs56219418	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6717795	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6728581	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6743733	0.80[CEU][hapmap]
rs7425514	0.90[JPT][hapmap];0.85[YRI][hapmap]
rs7558351	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7581924	0.86[JPT][hapmap];0.91[YRI][hapmap];0.81[AFR][1000 genomes]
rs7593595	0.86[JPT][hapmap]
rs7601398	0.86[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs872158	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs872160	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs951424	0.82[CEU][hapmap]
rs951425	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs951426	0.92[ASN][1000 genomes]
rs954649	0.80[CEU][hapmap]
rs979901	0.81[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs988288	0.84[ASN][1000 genomes]
rs988290	0.86[JPT][hapmap];0.96[YRI][hapmap]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180476600-180479400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr2:180476600-180479600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr2:180476600-180479600	Enhancers	Osteobl	bone
4	chr2:180477200-180479800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr2:180477200-180480000	Enhancers	Placenta Amnion	Placenta Amnion
6	chr2:180477200-180480000	Enhancers	NHLF	lung
7	chr2:180477400-180488200	Weak transcription	Pancreas	Pancrea
8	chr2:180477800-180484200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr2:180478000-180483000	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr2:180478200-180479400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr2:180478200-180479600	Enhancers	HSMM	muscle
12	chr2:180478400-180479400	Enhancers	Muscle Satellite Cultured Cells	--
13	chr2:180478800-180479600	Enhancers	Fetal Lung	lung
14	chr2:180478800-180479800	Enhancers	HSMMtube	muscle
15	chr2:180478800-180481200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr2:180478800-180488200	Weak transcription	Lung	lung
17	chr2:180479000-180479600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr2:180479000-180479600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr2:180479000-180487400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr2:180479200-180480000	Enhancers	NHEK	skin

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