Variant report

Variant	rs56219418
Chromosome Location	chr2:180473730-180473731
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:180473666..180476592-chr2:180484844..180487582,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10169561	0.82[ASN][1000 genomes]
rs1115013	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11687634	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11692794	0.82[ASN][1000 genomes]
rs11889907	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12615265	0.88[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs12615343	0.88[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs12693197	0.84[ASN][1000 genomes]
rs12987486	0.88[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs13000027	0.82[ASN][1000 genomes]
rs13012946	0.82[ASN][1000 genomes]
rs13021168	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13022986	0.97[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1554101	0.92[ASN][1000 genomes]
rs1581175	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1606814	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1606816	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16866857	0.88[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs1877943	0.92[ASN][1000 genomes]
rs2138195	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34528783	0.88[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs34663462	0.88[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs36060902	0.88[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs4414648	0.83[ASN][1000 genomes]
rs4511690	0.81[ASN][1000 genomes]
rs4894113	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4894115	0.92[ASN][1000 genomes]
rs6717795	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6728581	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7558351	0.92[ASN][1000 genomes]
rs7601398	0.88[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs872158	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs872159	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs872160	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs951425	0.92[ASN][1000 genomes]
rs951426	0.92[ASN][1000 genomes]
rs979901	0.84[ASN][1000 genomes]
rs988288	0.84[ASN][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180471000-180476800	Weak transcription	Fetal Lung	lung
2	chr2:180471200-180477200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr2:180471800-180474600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr2:180472000-180477000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr2:180473000-180474000	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr2:180473000-180474200	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr2:180473400-180474200	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr2:180473400-180474600	Enhancers	Fetal Heart	heart
9	chr2:180473600-180474000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr2:180473600-180478400	Weak transcription	Muscle Satellite Cultured Cells	--

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