Variant report

Variant	rs951425
Chromosome Location	chr2:180482698-180482699
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:180477852..180480440-chr2:180482454..180484640,2	K562	blood:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10048645	0.85[JPT][hapmap]
rs10169561	0.85[JPT][hapmap]
rs1115013	0.92[ASN][1000 genomes]
rs11687634	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11692794	0.85[JPT][hapmap]
rs11889907	0.92[ASN][1000 genomes]
rs12622221	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs12693196	0.84[JPT][hapmap]
rs12693197	0.84[JPT][hapmap]
rs13000199	0.85[JPT][hapmap]
rs13004211	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs13012946	0.85[JPT][hapmap]
rs13021168	0.92[ASN][1000 genomes]
rs13022986	0.92[ASN][1000 genomes]
rs13026689	0.85[JPT][hapmap]
rs13035781	0.85[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs13411084	0.85[JPT][hapmap]
rs13411180	0.84[JPT][hapmap]
rs1515268	0.85[CEU][hapmap]
rs1515274	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs1515309	0.85[CEU][hapmap]
rs1515315	0.90[JPT][hapmap]
rs1515317	0.90[JPT][hapmap]
rs1533385	0.84[JPT][hapmap]
rs1554101	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1581175	0.92[ASN][1000 genomes]
rs1606814	0.92[ASN][1000 genomes]
rs1606816	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs16866810	0.80[JPT][hapmap]
rs16866832	0.84[JPT][hapmap]
rs16866857	1.00[JPT][hapmap]
rs16866865	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs16866871	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs1877943	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.87[AFR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2138193	0.81[CEU][hapmap]
rs2138195	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2176061	0.81[JPT][hapmap]
rs2222031	0.90[JPT][hapmap]
rs2887110	0.84[JPT][hapmap]
rs3106712	0.90[JPT][hapmap]
rs3106716	0.92[CEU][hapmap]
rs4414648	0.89[ASN][1000 genomes]
rs4511690	0.84[JPT][hapmap]
rs4894113	0.92[ASN][1000 genomes]
rs4894115	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56219418	0.92[ASN][1000 genomes]
rs6717795	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6728581	0.83[ASN][1000 genomes]
rs7425514	0.89[JPT][hapmap]
rs7558351	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.93[AFR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7581924	0.84[JPT][hapmap]
rs7593595	0.85[JPT][hapmap]
rs7601398	1.00[JPT][hapmap]
rs7608208	0.88[CEU][hapmap]
rs872158	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs872159	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs872160	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs951426	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs979901	0.90[JPT][hapmap]
rs988290	0.85[JPT][hapmap]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180477400-180488200	Weak transcription	Pancreas	Pancrea
2	chr2:180477800-180484200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr2:180478000-180483000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr2:180478800-180488200	Weak transcription	Lung	lung
5	chr2:180479000-180487400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr2:180479600-180483400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr2:180479600-180483600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr2:180480000-180483400	Weak transcription	NHEK	skin
9	chr2:180482600-180482800	Enhancers	Aorta	Aorta

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