Variant report

Variant	rs1515309
Chromosome Location	chr2:180444967-180444968
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10179050	1.00[JPT][hapmap];0.85[AFR][1000 genomes]
rs10191369	1.00[JPT][hapmap]
rs11695089	0.91[YRI][hapmap]
rs1515307	1.00[CHB][hapmap]
rs1515311	1.00[JPT][hapmap];0.91[YRI][hapmap];0.80[AFR][1000 genomes]
rs1554101	0.88[CEU][hapmap]
rs3106715	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3106716	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3112976	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs34721549	0.82[AFR][1000 genomes]
rs4894115	0.89[CEU][hapmap]
rs876800	0.82[ASN][1000 genomes]
rs876801	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs951425	0.85[CEU][hapmap]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180433000-180445600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:180435200-180461000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:180435400-180446400	Weak transcription	Fetal Kidney	kidney
4	chr2:180437600-180445200	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr2:180439400-180445000	Weak transcription	Stomach Mucosa	stomach
6	chr2:180439800-180445200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr2:180439800-180445200	Weak transcription	Fetal Lung	lung
8	chr2:180439800-180446400	Enhancers	Liver	Liver
9	chr2:180441200-180445200	Weak transcription	Pancreas	Pancrea
10	chr2:180442400-180446800	Enhancers	HepG2	liver
11	chr2:180443600-180445000	Weak transcription	Fetal Intestine Large	intestine
12	chr2:180444200-180445200	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr2:180444200-180445800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr2:180444600-180445200	Enhancers	Adipose Nuclei	Adipose
15	chr2:180444600-180445800	Enhancers	Fetal Intestine Small	intestine
16	chr2:180444800-180445800	Enhancers	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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