Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:180441137..180442663-chr2:180445038..180447990,2	K562	blood:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10191369	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10497542	0.81[CEU][hapmap]
rs11689295	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11695089	1.00[ASW][hapmap];0.82[JPT][hapmap];0.93[LWK][hapmap];0.97[MKK][hapmap];0.83[YRI][hapmap];0.92[AFR][1000 genomes]
rs12986652	0.82[JPT][hapmap]
rs13028216	0.82[JPT][hapmap]
rs13029050	0.82[JPT][hapmap]
rs13035781	0.93[CEU][hapmap]
rs1515304	0.82[JPT][hapmap]
rs1515305	0.82[JPT][hapmap]
rs1515309	1.00[JPT][hapmap];0.85[AFR][1000 genomes]
rs1515311	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16866819	0.82[JPT][hapmap]
rs16866823	0.82[JPT][hapmap]
rs16866834	0.82[JPT][hapmap]
rs17817559	1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs3106716	1.00[JPT][hapmap];0.83[LWK][hapmap]
rs3112976	1.00[JPT][hapmap]
rs34721549	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6721295	0.82[JPT][hapmap]
rs9288040	0.82[JPT][hapmap]
rs951427	0.82[JPT][hapmap]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180435200-180461000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:180435400-180446400	Weak transcription	Fetal Kidney	kidney
3	chr2:180439800-180446400	Enhancers	Liver	Liver
4	chr2:180442400-180446800	Enhancers	HepG2	liver
5	chr2:180445200-180450600	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr2:180445600-180449400	Weak transcription	Right Atrium	heart
7	chr2:180445800-180449200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr2:180445800-180449200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr2:180445800-180449200	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr2:180446000-180449200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr2:180446200-180446800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr2:180446200-180449200	Weak transcription	Fetal Heart	heart

Quick Search: