Variant report

Variant	rs13029050
Chromosome Location	chr2:180460522-180460523
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:180459993..180460542-chr2:180511399..180512209,2	MCF-7	breast:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10048645	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs10179050	0.82[JPT][hapmap]
rs10189196	0.84[EUR][1000 genomes]
rs10189808	0.90[EUR][1000 genomes]
rs10191369	0.82[JPT][hapmap]
rs11674582	1.00[CEU][hapmap]
rs11683510	1.00[CEU][hapmap];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11695089	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12615265	0.89[EUR][1000 genomes]
rs12615343	0.89[EUR][1000 genomes]
rs12693195	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12693196	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs12986652	1.00[JPT][hapmap];0.95[YRI][hapmap];0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12987486	0.89[EUR][1000 genomes]
rs12991282	0.90[EUR][1000 genomes]
rs12991713	1.00[CEU][hapmap]
rs13000199	1.00[CEU][hapmap];0.80[YRI][hapmap];0.89[EUR][1000 genomes]
rs13001067	0.90[EUR][1000 genomes]
rs13014868	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13026689	1.00[CEU][hapmap];0.85[YRI][hapmap];0.90[EUR][1000 genomes]
rs13028216	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13411084	0.80[YRI][hapmap]
rs1515304	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1515305	1.00[JPT][hapmap]
rs1515311	0.82[JPT][hapmap]
rs1515312	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1515313	0.90[EUR][1000 genomes]
rs1515314	0.90[EUR][1000 genomes]
rs1606813	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16866810	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs16866819	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16866823	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16866832	1.00[CEU][hapmap];0.86[YRI][hapmap];0.90[EUR][1000 genomes]
rs16866834	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16866857	1.00[CEU][hapmap];0.83[YRI][hapmap];0.89[EUR][1000 genomes]
rs2176061	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2222031	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2887110	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs3106716	0.82[JPT][hapmap]
rs3112976	0.82[JPT][hapmap]
rs34313722	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34376589	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34528783	0.89[EUR][1000 genomes]
rs34545498	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34663462	0.87[EUR][1000 genomes]
rs35439427	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35664499	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36060902	0.89[EUR][1000 genomes]
rs62176093	0.87[ASN][1000 genomes]
rs6721295	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs71425640	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73973307	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7581924	1.00[CEU][hapmap];0.81[YRI][hapmap];0.87[EUR][1000 genomes]
rs7592221	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7593595	1.00[CEU][hapmap];0.80[YRI][hapmap];0.90[EUR][1000 genomes]
rs7601398	1.00[CEU][hapmap];0.83[YRI][hapmap];0.89[EUR][1000 genomes]
rs7604253	1.00[JPT][hapmap]
rs9288040	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs951427	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs969231	0.90[EUR][1000 genomes]
rs988289	0.90[EUR][1000 genomes]
rs988290	1.00[CEU][hapmap];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875471	chr2:180448523-180469778	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180435200-180461000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:180457800-180460600	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr2:180458000-180460800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr2:180459200-180461400	Enhancers	Osteobl	bone
5	chr2:180459800-180461200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr2:180460000-180461600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr2:180460200-180460600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr2:180460400-180460600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr2:180460400-180460600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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