Variant report

Variant	rs7592221
Chromosome Location	chr2:180439537-180439538
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:180438670..180439638-chr2:180510962..180512189,4	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10189196	0.86[EUR][1000 genomes]
rs11683510	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11695089	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12693195	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12986652	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13014868	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13028216	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13029050	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1515304	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1515312	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1606813	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16866810	0.86[EUR][1000 genomes]
rs16866819	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16866823	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16866834	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34313722	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34376589	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34545498	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35439427	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35664499	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62176093	0.87[ASN][1000 genomes]
rs6721295	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs71425640	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73973307	0.88[EUR][1000 genomes]
rs9288040	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs951427	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180433000-180440800	Weak transcription	Gastric	stomach
2	chr2:180433000-180445600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:180435200-180461000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:180435400-180446400	Weak transcription	Fetal Kidney	kidney
5	chr2:180437600-180445200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr2:180438400-180439800	Flanking Active TSS	Liver	Liver
7	chr2:180438600-180439800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr2:180438600-180439800	Enhancers	Osteobl	bone
9	chr2:180438800-180439600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr2:180438800-180439600	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr2:180438800-180439800	Enhancers	Fetal Lung	lung
12	chr2:180439000-180441000	Enhancers	HepG2	liver
13	chr2:180439200-180439600	Weak transcription	Fetal Intestine Large	intestine
14	chr2:180439400-180443200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr2:180439400-180445000	Weak transcription	Stomach Mucosa	stomach

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