Variant report

Variant	rs13014868
Chromosome Location	chr2:180458327-180458328
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10048645	0.90[EUR][1000 genomes]
rs10189196	0.84[EUR][1000 genomes]
rs10189808	0.90[EUR][1000 genomes]
rs11683510	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11695089	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12615265	0.89[EUR][1000 genomes]
rs12615343	0.89[EUR][1000 genomes]
rs12693195	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12693196	0.84[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs12986652	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12987486	0.89[EUR][1000 genomes]
rs12991282	0.90[EUR][1000 genomes]
rs13000199	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs13001067	0.85[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs13026689	0.90[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs13028216	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13029050	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13411084	0.85[AFR][1000 genomes]
rs13411180	0.85[AFR][1000 genomes]
rs1515304	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1515312	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1515313	0.85[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1515314	0.84[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1606813	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16866810	0.84[EUR][1000 genomes]
rs16866819	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16866823	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16866832	0.90[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs16866834	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16866857	0.89[EUR][1000 genomes]
rs2176061	0.90[EUR][1000 genomes]
rs2222031	0.90[EUR][1000 genomes]
rs2887110	0.90[EUR][1000 genomes]
rs34313722	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34376589	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34528783	0.89[EUR][1000 genomes]
rs34545498	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34663462	0.87[EUR][1000 genomes]
rs35439427	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35664499	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs36060902	0.89[EUR][1000 genomes]
rs62176093	1.00[ASN][1000 genomes]
rs6721295	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71425640	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73973307	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7581924	0.87[EUR][1000 genomes]
rs7592221	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7593595	0.85[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs7601398	0.89[EUR][1000 genomes]
rs9288040	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs951427	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs969231	0.90[EUR][1000 genomes]
rs988289	0.90[EUR][1000 genomes]
rs988290	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875471	chr2:180448523-180469778	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180435200-180461000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:180456400-180459400	Active TSS	Skeletal Muscle Male	skeletal muscle
3	chr2:180456600-180458400	Weak transcription	Psoas Muscle	Psoas
4	chr2:180456600-180459200	Active TSS	Skeletal Muscle Female	skeletal muscle
5	chr2:180456600-180459600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr2:180456800-180460400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr2:180457400-180459400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr2:180457600-180459200	Weak transcription	Osteobl	bone
9	chr2:180457800-180460600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr2:180458000-180458600	Weak transcription	Fetal Intestine Small	intestine
11	chr2:180458000-180459400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr2:180458000-180460800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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