Variant report

Variant	rs16866810
Chromosome Location	chr2:180450163-180450164
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr2:180449979-180450564	H1-neurons	neurons:	n/a	n/a
2	REST	chr2:180450040-180450648	H1-neurons	neurons:	n/a	n/a

Variant related genes	Relation type
ZNF385B	TF binding region

Extended variants
information (count: 100 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs10048645	1.00[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10169561	0.95[JPT][hapmap]
rs10189196	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10189808	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10497542	0.85[CHB][hapmap]
rs11674582	1.00[CEU][hapmap]
rs11683272	1.00[CEU][hapmap]
rs11683510	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs11687634	0.82[JPT][hapmap]
rs11688895	1.00[CEU][hapmap]
rs11692794	0.95[JPT][hapmap]
rs11695089	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs11885342	0.81[ASN][1000 genomes]
rs12615265	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12615343	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12693195	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs12693196	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12693197	1.00[JPT][hapmap]
rs12986652	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs12987486	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12991282	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12991713	1.00[CEU][hapmap]
rs13000199	1.00[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13001067	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13012946	0.95[JPT][hapmap]
rs13014868	0.84[EUR][1000 genomes]
rs13026689	1.00[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13028216	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs13029050	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs13035781	0.82[JPT][hapmap]
rs13411084	0.85[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs13411180	0.84[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1356069	0.91[JPT][hapmap]
rs1515304	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs1515306	0.85[CHB][hapmap]
rs1515310	0.85[CHB][hapmap]
rs1515312	0.87[EUR][1000 genomes]
rs1515313	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1515314	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1515315	0.82[JPT][hapmap]
rs1515317	0.82[JPT][hapmap]
rs1533385	0.81[JPT][hapmap]
rs1533387	0.84[ASN][1000 genomes]
rs1554101	0.86[JPT][hapmap]
rs1606813	0.84[EUR][1000 genomes]
rs1606816	0.82[JPT][hapmap]
rs16866814	0.80[ASN][1000 genomes]
rs16866815	0.85[CHB][hapmap];0.80[ASN][1000 genomes]
rs16866819	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs16866822	0.84[CHB][hapmap];0.85[ASN][1000 genomes]
rs16866823	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs16866832	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16866834	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs16866842	0.84[CHB][hapmap];0.84[ASN][1000 genomes]
rs16866850	0.85[CHB][hapmap];0.84[ASN][1000 genomes]
rs16866857	1.00[CEU][hapmap];0.82[JPT][hapmap];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17818050	0.90[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs1877943	0.81[JPT][hapmap]
rs2138195	0.81[JPT][hapmap]
rs2176061	1.00[CEU][hapmap];0.84[CHB][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2222031	1.00[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2887110	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3106712	0.81[JPT][hapmap]
rs3106713	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs3106714	0.85[CHB][hapmap];0.95[JPT][hapmap]
rs34313722	0.91[EUR][1000 genomes]
rs34376589	0.87[EUR][1000 genomes]
rs34528783	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34545498	0.91[EUR][1000 genomes]
rs34663462	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35439427	0.84[EUR][1000 genomes]
rs35664499	0.84[EUR][1000 genomes]
rs36060902	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4511690	1.00[JPT][hapmap]
rs4530328	1.00[CEU][hapmap]
rs4894115	0.86[JPT][hapmap]
rs61432525	0.83[ASN][1000 genomes]
rs6717795	0.81[JPT][hapmap]
rs6721295	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs71425640	0.83[EUR][1000 genomes]
rs73039384	0.82[ASN][1000 genomes]
rs73973307	0.84[EUR][1000 genomes]
rs7425514	0.85[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs7558351	0.82[JPT][hapmap]
rs7581924	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs7592221	0.86[EUR][1000 genomes]
rs7593595	1.00[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7601398	1.00[CEU][hapmap];0.81[JPT][hapmap];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs872158	0.86[JPT][hapmap]
rs872159	0.81[JPT][hapmap]
rs872160	0.82[JPT][hapmap]
rs908287	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs9288040	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs951425	0.80[JPT][hapmap]
rs951427	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs969231	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs979901	0.90[JPT][hapmap]
rs988289	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs988290	1.00[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875471	chr2:180448523-180469778	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180435200-180461000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:180445200-180450600	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr2:180449200-180450200	Enhancers	HepG2	liver
4	chr2:180449200-180451200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr2:180449600-180453200	Weak transcription	Psoas Muscle	Psoas
6	chr2:180449800-180456600	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr2:180450000-180456400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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