Variant report

Variant	rs11687634
Chromosome Location	chr2:180476638-180476639
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:180476329..180478000-chr2:180485125..180487896,2	MCF-7	breast:

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10048645	0.86[JPT][hapmap];0.82[YRI][hapmap]
rs10169561	0.81[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs1115013	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11692794	0.81[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs11889907	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12615265	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs12615343	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs12622221	0.81[CHB][hapmap]
rs12693196	0.86[JPT][hapmap]
rs12693197	0.85[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs12987486	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs13000027	0.82[ASN][1000 genomes]
rs13000199	0.86[JPT][hapmap]
rs13004211	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs13012946	0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs13021168	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13022986	0.98[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13026689	0.86[JPT][hapmap]
rs13035781	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs13411084	0.86[JPT][hapmap]
rs13411180	0.86[JPT][hapmap]
rs1515274	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs1515315	0.91[JPT][hapmap]
rs1515317	0.91[JPT][hapmap]
rs1533385	0.85[JPT][hapmap]
rs1554101	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1581175	0.95[CEU][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1606814	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1606816	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16866810	0.82[JPT][hapmap]
rs16866832	0.86[JPT][hapmap]
rs16866857	0.86[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs16866865	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs16866871	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs17818050	0.81[JPT][hapmap]
rs1877943	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2138195	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2176061	0.82[JPT][hapmap];0.84[YRI][hapmap]
rs2222031	0.91[JPT][hapmap]
rs2887110	0.86[JPT][hapmap];0.81[YRI][hapmap]
rs3106712	0.91[JPT][hapmap]
rs3106713	0.81[JPT][hapmap]
rs3106714	0.81[JPT][hapmap]
rs34528783	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs34663462	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs36060902	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs4414648	0.83[ASN][1000 genomes]
rs4511690	0.85[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs4894113	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4894115	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs56219418	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6717795	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6728581	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7425514	0.90[JPT][hapmap];0.83[YRI][hapmap]
rs7558351	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7581924	0.86[JPT][hapmap];0.86[YRI][hapmap]
rs7593595	0.86[JPT][hapmap]
rs7601398	0.86[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs872158	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs872159	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs872160	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs951425	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs951426	0.92[ASN][1000 genomes]
rs979901	0.81[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs988288	0.84[ASN][1000 genomes]
rs988290	0.86[JPT][hapmap];0.91[YRI][hapmap]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180471000-180476800	Weak transcription	Fetal Lung	lung
2	chr2:180471200-180477200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr2:180472000-180477000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr2:180473600-180478400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr2:180474200-180477000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr2:180474200-180477200	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr2:180474600-180476800	Weak transcription	Fetal Heart	heart
8	chr2:180476600-180479400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr2:180476600-180479600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr2:180476600-180479600	Enhancers	Osteobl	bone

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