Variant report

Variant	rs7558351
Chromosome Location	chr2:180486431-180486432
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:180473666..180476592-chr2:180484844..180487582,2	K562	blood:
2	chr2:180476329..180478000-chr2:180485125..180487896,2	MCF-7	breast:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10048645	0.86[JPT][hapmap]
rs10169561	0.86[JPT][hapmap]
rs1115013	0.92[ASN][1000 genomes]
rs11687634	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11692794	0.86[JPT][hapmap]
rs11889907	0.92[ASN][1000 genomes]
rs11904349	0.89[CEU][hapmap]
rs12614173	0.86[CEU][hapmap]
rs12622221	0.85[CHB][hapmap]
rs12693196	0.86[JPT][hapmap]
rs12693197	0.86[JPT][hapmap]
rs13000199	0.86[JPT][hapmap]
rs13004211	0.85[CHB][hapmap];0.91[JPT][hapmap]
rs13005620	0.81[ASN][1000 genomes]
rs13012946	0.86[JPT][hapmap]
rs13021168	0.92[ASN][1000 genomes]
rs13022986	0.92[ASN][1000 genomes]
rs13026689	0.86[JPT][hapmap]
rs13028491	0.81[ASN][1000 genomes]
rs13035781	0.85[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs13411084	0.86[JPT][hapmap]
rs13411180	0.86[JPT][hapmap]
rs1515274	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs1515315	0.91[JPT][hapmap]
rs1515317	0.91[JPT][hapmap]
rs1533385	0.85[JPT][hapmap]
rs1554101	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1581175	0.92[ASN][1000 genomes]
rs1606814	0.92[ASN][1000 genomes]
rs1606816	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs16866810	0.82[JPT][hapmap]
rs16866832	0.86[JPT][hapmap]
rs16866857	0.80[CHB][hapmap];1.00[JPT][hapmap]
rs16866865	0.85[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs16866871	0.85[CHB][hapmap];0.91[JPT][hapmap]
rs17818050	0.81[JPT][hapmap]
rs1877943	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2138195	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2176061	0.82[JPT][hapmap]
rs2222031	0.91[JPT][hapmap]
rs2887110	0.86[JPT][hapmap]
rs3106712	0.91[JPT][hapmap]
rs3106713	0.81[JPT][hapmap]
rs3106714	0.81[JPT][hapmap]
rs3106716	0.88[CEU][hapmap]
rs35413867	0.81[ASN][1000 genomes]
rs4414648	0.91[ASN][1000 genomes]
rs4511690	0.86[JPT][hapmap]
rs4894113	0.92[ASN][1000 genomes]
rs4894115	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56219418	0.92[ASN][1000 genomes]
rs6717795	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6728581	0.83[ASN][1000 genomes]
rs7425514	0.90[JPT][hapmap]
rs7581924	0.86[JPT][hapmap]
rs7593595	0.86[JPT][hapmap]
rs7601398	0.80[CHB][hapmap];1.00[JPT][hapmap]
rs872158	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs872159	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs872160	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs951425	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.93[AFR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs951426	0.95[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs979901	0.91[JPT][hapmap]
rs988290	0.86[JPT][hapmap]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180477400-180488200	Weak transcription	Pancreas	Pancrea
2	chr2:180478800-180488200	Weak transcription	Lung	lung
3	chr2:180479000-180487400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr2:180484000-180487200	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr2:180486000-180494600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr2:180486400-180487800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr2:180486400-180487800	Enhancers	HSMMtube	muscle
8	chr2:180486400-180489800	Enhancers	Fetal Heart	heart

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