Variant report

Variant	rs12622221
Chromosome Location	chr2:180485570-180485571
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:180473666..180476592-chr2:180484844..180487582,2	K562	blood:
2	chr2:180476329..180478000-chr2:180485125..180487896,2	MCF-7	breast:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10048645	0.81[ASN][1000 genomes]
rs10189808	0.81[ASN][1000 genomes]
rs11687634	0.81[CHB][hapmap]
rs12612821	0.89[ASN][1000 genomes]
rs12615265	0.92[ASN][1000 genomes]
rs12615343	0.92[ASN][1000 genomes]
rs12693196	0.81[ASN][1000 genomes]
rs12987486	0.92[ASN][1000 genomes]
rs12991282	0.81[ASN][1000 genomes]
rs13004211	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs13005620	0.82[ASN][1000 genomes]
rs13028491	0.82[ASN][1000 genomes]
rs13035781	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs1356065	0.90[CHB][hapmap];0.84[ASN][1000 genomes]
rs1356066	0.90[CHB][hapmap];0.84[ASN][1000 genomes]
rs1515274	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs1554101	0.84[CHB][hapmap]
rs1606816	0.81[CHB][hapmap]
rs16866815	0.85[JPT][hapmap]
rs16866822	0.84[JPT][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16866842	0.84[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16866850	0.90[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16866857	0.95[CHB][hapmap];0.92[ASN][1000 genomes]
rs16866865	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs16866871	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs16866876	0.89[CHB][hapmap];0.84[ASN][1000 genomes]
rs1877943	0.85[CHB][hapmap]
rs2138195	0.81[CHB][hapmap]
rs2176061	0.81[ASN][1000 genomes]
rs2222031	0.80[ASN][1000 genomes]
rs28792088	0.91[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2887110	0.81[ASN][1000 genomes]
rs34528783	0.92[ASN][1000 genomes]
rs34663462	0.92[ASN][1000 genomes]
rs35046215	0.80[ASN][1000 genomes]
rs35413867	0.82[ASN][1000 genomes]
rs36017881	0.89[ASN][1000 genomes]
rs36060902	0.92[ASN][1000 genomes]
rs4894115	0.85[CHB][hapmap]
rs61432525	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62176301	0.91[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs62176328	0.91[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs62176331	0.91[AFR][1000 genomes]
rs6717795	0.81[CHB][hapmap]
rs7425514	0.81[ASN][1000 genomes]
rs7558351	0.85[CHB][hapmap]
rs7601398	0.95[CHB][hapmap];0.92[ASN][1000 genomes]
rs7608224	0.89[JPT][hapmap]
rs872158	0.81[CHB][hapmap]
rs872159	0.81[CHB][hapmap]
rs872160	0.81[CHB][hapmap]
rs908287	0.80[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs951425	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs969231	0.81[ASN][1000 genomes]
rs988289	0.81[ASN][1000 genomes]
rs988290	0.81[ASN][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180477400-180488200	Weak transcription	Pancreas	Pancrea
2	chr2:180478800-180488200	Weak transcription	Lung	lung
3	chr2:180479000-180487400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr2:180483400-180486400	Weak transcription	Fetal Heart	heart
5	chr2:180484000-180487200	Weak transcription	Skeletal Muscle Male	skeletal muscle

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