Variant report

Variant	rs28792088
Chromosome Location	chr2:180497294-180497295
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10497544	0.82[AMR][1000 genomes]
rs12612821	0.87[ASN][1000 genomes]
rs12615265	0.81[ASN][1000 genomes]
rs12615343	0.81[ASN][1000 genomes]
rs12622221	0.91[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs12987486	0.81[ASN][1000 genomes]
rs13004211	0.89[ASN][1000 genomes]
rs13005620	0.80[ASN][1000 genomes]
rs13028491	0.80[ASN][1000 genomes]
rs1356065	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1356066	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1399686	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1399687	0.89[EUR][1000 genomes]
rs1515274	0.89[ASN][1000 genomes]
rs1515277	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1515278	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16866842	0.91[AFR][1000 genomes]
rs16866850	0.91[AFR][1000 genomes]
rs16866857	0.81[ASN][1000 genomes]
rs16866865	0.80[ASN][1000 genomes]
rs16866871	0.89[ASN][1000 genomes]
rs16866876	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2367891	0.80[ASN][1000 genomes]
rs34528783	0.81[ASN][1000 genomes]
rs34663462	0.81[ASN][1000 genomes]
rs35046215	0.82[ASN][1000 genomes]
rs35413867	0.80[ASN][1000 genomes]
rs36017881	0.87[ASN][1000 genomes]
rs36060902	0.81[ASN][1000 genomes]
rs58386506	0.84[ASN][1000 genomes]
rs61432525	0.91[AFR][1000 genomes]
rs62176301	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62176328	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62176331	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62176332	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62176334	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6756679	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7601398	0.81[ASN][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180489600-180500800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr2:180495000-180502200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:180496200-180497400	Enhancers	Liver	Liver
4	chr2:180497000-180500800	Weak transcription	HepG2	liver

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