Variant report

Variant	rs10497544
Chromosome Location	chr2:180517350-180517351
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs1022311	1.00[CHB][hapmap];0.81[CHD][hapmap];0.83[ASN][1000 genomes]
rs11901346	1.00[CHB][hapmap];0.81[CHD][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs12053119	1.00[ASW][hapmap]
rs12373725	0.89[CHB][hapmap];0.91[JPT][hapmap]
rs12473571	1.00[ASW][hapmap]
rs12622727	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs12623583	1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs12693196	0.83[MEX][hapmap]
rs13009601	0.83[MEX][hapmap]
rs13419649	0.93[CHB][hapmap];0.90[JPT][hapmap]
rs13427033	0.94[CHB][hapmap]
rs1356065	1.00[CEU][hapmap];0.87[AMR][1000 genomes]
rs1356066	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1399686	1.00[CEU][hapmap];0.93[AMR][1000 genomes]
rs1399687	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1515274	0.88[MEX][hapmap]
rs1515277	1.00[CEU][hapmap];0.93[AMR][1000 genomes]
rs1515278	1.00[CEU][hapmap];0.94[MEX][hapmap];0.93[AMR][1000 genomes]
rs1515281	0.81[MEX][hapmap]
rs1515287	0.94[CHB][hapmap]
rs1515289	0.94[CHB][hapmap];0.91[JPT][hapmap]
rs16866822	1.00[ASW][hapmap];0.94[MEX][hapmap]
rs16866832	0.83[MEX][hapmap]
rs16866842	1.00[ASW][hapmap];0.94[MEX][hapmap]
rs16866876	1.00[CEU][hapmap];0.94[MEX][hapmap];0.83[TSI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16866903	1.00[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs16866915	1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs16866945	1.00[ASW][hapmap]
rs17820975	0.82[ASN][1000 genomes]
rs2292652	1.00[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs28792088	0.82[AMR][1000 genomes]
rs2887110	0.83[MEX][hapmap]
rs3106689	1.00[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs3106725	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs3112968	1.00[CHB][hapmap];0.83[CHD][hapmap];0.90[JPT][hapmap]
rs3112970	1.00[CHB][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap]
rs34714722	0.81[ASN][1000 genomes]
rs55935953	0.87[AMR][1000 genomes]
rs58011887	0.89[ASN][1000 genomes]
rs59743027	0.99[ASN][1000 genomes]
rs61241001	0.84[ASN][1000 genomes]
rs62175163	0.85[ASN][1000 genomes]
rs62175164	0.83[ASN][1000 genomes]
rs62175165	0.83[ASN][1000 genomes]
rs62175169	0.83[ASN][1000 genomes]
rs62175183	0.83[ASN][1000 genomes]
rs62175184	0.83[ASN][1000 genomes]
rs62176301	0.93[AMR][1000 genomes]
rs62176328	0.93[AMR][1000 genomes]
rs62176331	0.93[AMR][1000 genomes]
rs62176332	0.93[AMR][1000 genomes]
rs62176334	0.87[AMR][1000 genomes]
rs62177571	0.89[ASN][1000 genomes]
rs6756679	1.00[CEU][hapmap];0.87[AMR][1000 genomes]
rs7421557	1.00[CHB][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap]
rs7558364	0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7558784	0.94[CHB][hapmap];0.91[JPT][hapmap]
rs7585897	0.83[ASN][1000 genomes]
rs7590028	0.88[CHB][hapmap];0.91[JPT][hapmap]
rs7592797	1.00[ASW][hapmap]
rs7607561	1.00[ASW][hapmap]
rs932113	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs932115	0.94[CHB][hapmap];0.91[JPT][hapmap]
rs956261	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180516400-180517400	Enhancers	Fetal Lung	lung
2	chr2:180517000-180517400	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr2:180517000-180517400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr2:180517000-180517800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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