Variant report

Variant	rs12623583
Chromosome Location	chr2:180541494-180541495
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10208354	0.86[ASN][1000 genomes]
rs1022311	1.00[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs10497544	1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs11686166	0.85[ASN][1000 genomes]
rs11901346	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12373725	0.88[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12614697	0.81[YRI][hapmap]
rs12622727	1.00[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs13406795	0.85[ASN][1000 genomes]
rs13419649	0.93[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs13427033	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs1515281	0.83[JPT][hapmap]
rs1515282	0.85[JPT][hapmap]
rs1515287	0.94[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs1515289	0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs16866903	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16866915	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17820975	0.82[ASN][1000 genomes]
rs2292652	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3106689	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3106725	0.93[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs3112968	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3112970	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs34714722	0.81[ASN][1000 genomes]
rs58011887	0.87[ASN][1000 genomes]
rs59743027	0.84[ASN][1000 genomes]
rs61241001	0.83[ASN][1000 genomes]
rs62175163	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62175164	0.96[ASN][1000 genomes]
rs62175165	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62175169	0.82[ASN][1000 genomes]
rs62175183	0.82[ASN][1000 genomes]
rs62175184	0.82[ASN][1000 genomes]
rs62177571	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7421557	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7558364	0.94[CHB][hapmap];0.92[JPT][hapmap];0.81[ASN][1000 genomes]
rs7558784	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs7585817	0.85[ASN][1000 genomes]
rs7585897	0.96[ASN][1000 genomes]
rs7590028	0.87[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs932113	0.94[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.92[ASN][1000 genomes]
rs932115	0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs956261	0.94[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.92[ASN][1000 genomes]
rs9989898	0.88[ASN][1000 genomes]

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180536200-180541600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr2:180537400-180542400	Weak transcription	Fetal Intestine Large	intestine
3	chr2:180540200-180541600	Enhancers	Fetal Heart	heart
4	chr2:180540400-180571200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:180540600-180543000	Weak transcription	Pancreas	Pancrea
6	chr2:180541200-180541600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr2:180541200-180541600	Enhancers	Brain Cingulate Gyrus	brain
8	chr2:180541200-180541600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr2:180541200-180541600	Enhancers	HSMMtube	muscle
10	chr2:180541200-180542000	Enhancers	Fetal Muscle Leg	muscle
11	chr2:180541200-180542000	Enhancers	Fetal Stomach	stomach
12	chr2:180541200-180542200	Enhancers	Duodenum Smooth Muscle	Duodenum
13	chr2:180541200-180542200	Enhancers	Psoas Muscle	Psoas
14	chr2:180541200-180542600	Enhancers	Liver	Liver
15	chr2:180541200-180543000	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr2:180541200-180543200	Enhancers	Fetal Lung	lung
17	chr2:180541200-180543800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr2:180541200-180544000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr2:180541400-180541800	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr2:180541400-180541800	Flanking Active TSS	Fetal Brain Male	brain
21	chr2:180541400-180541800	Enhancers	Left Ventricle	heart
22	chr2:180541400-180541800	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr2:180541400-180542000	Enhancers	GM12878-XiMat	blood
24	chr2:180541400-180542000	Enhancers	Osteobl	bone
25	chr2:180541400-180542200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr2:180541400-180542200	Enhancers	Brain Angular Gyrus	brain
27	chr2:180541400-180542200	Enhancers	Fetal Brain Female	brain
28	chr2:180541400-180542400	Enhancers	Muscle Satellite Cultured Cells	--
29	chr2:180541400-180542600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr2:180541400-180542600	Enhancers	Brain Anterior Caudate	brain
31	chr2:180541400-180542600	Enhancers	HSMM	muscle
32	chr2:180541400-180543200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr2:180541400-180543200	Enhancers	Colon Smooth Muscle	Colon

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